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Package: shinyGEO
Title: Gene Expression Omnibus Analysis with Shiny
Version: 1.0.0
Authors@R: c(
person("Jasmine", "Dumas", email = "jasmine.dumas@gmail.com", role = c("aut", "cre")),
person("Garrett", "Dancik", email = "dancikg@easternct.edu", role = "aut"),
person("Michael", "Gargano", role = "ctb"),
person("Ken-Heng Henry", "Liao", role = "ctb"),
person("Branden", "Spratt", role = "ctb"),
person("Greg", "Harper", role = "ctb"))
Description: A web application to download, parse, transform, model,
and visualize microarray gene expression data sets. shinyGEO
can perform differential expression analysis & survival analysis
across genes, probes and phenotype groups. A report with code
and can also be generated for complete reporducibility at the console.
Depends: R (>= 3.2.0)
BugReports: https://github.com/jasdumas/shinyGEO/issues
URL: https://github.com/jasdumas/shinyGEO
Imports:
shiny,
GEOquery,
Biobase,
reshape2,
survival,
limma,
affy,
shinyBS,
GGally,
ggplot2,
shinyAce,
knitr,
DT,
rvest,
readr,
magrittr,
xml2,
devtools
License: MIT + file LICENSE
RoxygenNote: 6.0.1
Suggests: covr,
testthat