Pipeline used to generate SimBa publication results.
Switch branches/tags
Nothing to show
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Failed to load latest commit information.
README.md
Snakefile

README.md

simba-publication-pipeline

Pipeline used to generate SimBa publication results.

To use the pipeline you will need to modify the following variables :

  • GENOME_DIR
  • REFERENCE_BASENAME
  • ANNOTATIONS
  • POLYMORPHISMS
  • FLUX_ERROR_MODEL
  • TMP_DIR

You will also need to uncomment the simct rule that will generate simulated dataset. The rule simct causes problem with the rest of the pipeline due to complex use of Snakefile wildcards.