Minor change to label of Time factor in output header.

jawhiteley · Mar 29, 2011 · 967f795 · 967f795
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commit 967f795
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diff --git a/SECCanova/SECC - ANOVA labels.R b/SECCanova/SECC - ANOVA labels.R
@@ -25,7 +25,7 @@ Save.final <- Save.plots              # Destination for final plots.
 Save.divider <-        "================================================================\n"
 Save.header  <- paste( "Nested ANOVA Results for:", Y.label, "(", Y.col, ")",
                      "\nTransformation used:     ", Y.use,
-                     "\nSample Time:  ", paste(Time.use,     collapse = ", "),
+                     "\nExpt. Time:   ", paste(Time.use,     collapse = ", "),
                      "\nChamber:      ", paste(Chamber.use,  collapse = ", "),
                      "\nFragmentation:", paste(Frag.use,     collapse = ", "),
                      "\nPatches:      ", paste(Position.use, collapse = ", "),

diff --git a/TODO b/TODO
@@ -20,15 +20,11 @@
 - investigate multcomp package for multiple comparisons
 - investigate gplot plackage for plotmeans function? (see Quick-R).
 
-- Build a Main control script to source() individual analysis scripts in one step each.
+
+
 
 Current Changes:
 ================
-Moved Time in Nesting structure
 
-Time is now nested within Block in the nested ANOVA model.
-If Time were the largest experimental unit, I could not test for significant effects among time points.  This allows such tests, which makes sense: in this case, Time is not a random effect -- each time point represents 'time since the start of the experiment'.
-This also matches the nesting layout in the field.
 
-- Change Time labels to 'time since start of experiment'
 
diff --git a/graphs/Results - ARA.m - 1.pdf b/graphs/Results - ARA.m - 1.pdf
diff --git a/graphs/Results - ARA.m - 123.pdf b/graphs/Results - ARA.m - 123.pdf
diff --git a/graphs/Results - ARA.m - 2.pdf b/graphs/Results - ARA.m - 2.pdf
diff --git a/graphs/Results - ARA.m - 3.pdf b/graphs/Results - ARA.m - 3.pdf
diff --git a/graphs/Results - Cells.m - 1.pdf b/graphs/Results - Cells.m - 1.pdf
diff --git a/graphs/Results - Cells.m - 123.pdf b/graphs/Results - Cells.m - 123.pdf
diff --git a/graphs/Results - Cells.m - 2.pdf b/graphs/Results - Cells.m - 2.pdf
diff --git a/graphs/Results - Cells.m - 3.pdf b/graphs/Results - Cells.m - 3.pdf
diff --git a/output/Results - ARA.m - 1.txt b/output/Results - ARA.m - 1.txt
@@ -1,11 +1,11 @@
 Nested ANOVA Results for: Acetylene Reduction ( ARA.m ) 
 Transformation used:      Y.sqrt 
-Sample Time:   12 months 
+Expt. Time:    12 months 
 Chamber:       Ambient, Full Chamber 
 Fragmentation: Continuous, Full Corridors, Pseudo-Corridors, Isolated 
 Patches:       Inner, other, Outer 
 
-Tue Mar 29 16:36:20 2011
+Tue Mar 29 16:45:15 2011
 
 ================================================================
 ================  Patch scale Results  =========================

diff --git a/output/Results - ARA.m - 123.txt b/output/Results - ARA.m - 123.txt
@@ -1,11 +1,11 @@
 Nested ANOVA Results for: Acetylene Reduction ( ARA.m ) 
 Transformation used:      Y.sqrt 
-Sample Time:   12 months, 22 months, 24 months 
+Expt. Time:    12 months, 22 months, 24 months 
 Chamber:       Ambient, Full Chamber 
 Fragmentation: Continuous, Full Corridors, Pseudo-Corridors, Isolated 
 Patches:       Inner, other, Outer 
 
-Tue Mar 29 16:36:23 2011
+Tue Mar 29 16:45:18 2011
 
 ================================================================
 ================  Patch scale Results  =========================

diff --git a/output/Results - ARA.m - 2.txt b/output/Results - ARA.m - 2.txt
@@ -1,11 +1,11 @@
 Nested ANOVA Results for: Acetylene Reduction ( ARA.m ) 
 Transformation used:      Y.sqrt 
-Sample Time:   22 months 
+Expt. Time:    22 months 
 Chamber:       Ambient, Full Chamber 
 Fragmentation: Continuous, Full Corridors, Pseudo-Corridors, Isolated 
 Patches:       Inner, other, Outer 
 
-Tue Mar 29 16:36:21 2011
+Tue Mar 29 16:45:16 2011
 
 ================================================================
 ================  Patch scale Results  =========================

diff --git a/output/Results - ARA.m - 3.txt b/output/Results - ARA.m - 3.txt
@@ -1,11 +1,11 @@
 Nested ANOVA Results for: Acetylene Reduction ( ARA.m ) 
 Transformation used:      Y.sqrt 
-Sample Time:   24 months 
+Expt. Time:    24 months 
 Chamber:       Ambient, Full Chamber 
 Fragmentation: Continuous, Full Corridors, Pseudo-Corridors, Isolated 
 Patches:       Inner, other, Outer 
 
-Tue Mar 29 16:36:22 2011
+Tue Mar 29 16:45:17 2011
 
 ================================================================
 ================  Patch scale Results  =========================

diff --git a/output/Results - Cells.m - 1.txt b/output/Results - Cells.m - 1.txt
@@ -1,11 +1,11 @@
 Nested ANOVA Results for: Cyanobacteria Cell Density ( Cells.m ) 
 Transformation used:      Y.4rt 
-Sample Time:   12 months 
+Expt. Time:    12 months 
 Chamber:       Ambient, Full Chamber 
 Fragmentation: Continuous, Full Corridors, Pseudo-Corridors, Isolated 
 Patches:       Inner, Outer 
 
-Tue Mar 29 16:36:41 2011
+Tue Mar 29 16:45:20 2011
 
 ================================================================
 ================  Patch scale Results  =========================

diff --git a/output/Results - Cells.m - 123.txt b/output/Results - Cells.m - 123.txt
@@ -1,11 +1,11 @@
 Nested ANOVA Results for: Cyanobacteria Cell Density ( Cells.m ) 
 Transformation used:      Y.4rt 
-Sample Time:   12 months, 22 months, 24 months 
+Expt. Time:    12 months, 22 months, 24 months 
 Chamber:       Ambient, Full Chamber 
 Fragmentation: Continuous, Full Corridors, Pseudo-Corridors, Isolated 
 Patches:       Inner, Outer 
 
-Tue Mar 29 16:36:43 2011
+Tue Mar 29 16:45:22 2011
 
 ================================================================
 ================  Patch scale Results  =========================

diff --git a/output/Results - Cells.m - 2.txt b/output/Results - Cells.m - 2.txt
@@ -1,11 +1,11 @@
 Nested ANOVA Results for: Cyanobacteria Cell Density ( Cells.m ) 
 Transformation used:      Y.4rt 
-Sample Time:   22 months 
+Expt. Time:    22 months 
 Chamber:       Ambient, Full Chamber 
 Fragmentation: Continuous, Full Corridors, Pseudo-Corridors, Isolated 
 Patches:       Inner, Outer 
 
-Tue Mar 29 16:36:42 2011
+Tue Mar 29 16:45:21 2011
 
 ================================================================
 ================  Patch scale Results  =========================

diff --git a/output/Results - Cells.m - 3.txt b/output/Results - Cells.m - 3.txt
@@ -1,11 +1,11 @@
 Nested ANOVA Results for: Cyanobacteria Cell Density ( Cells.m ) 
 Transformation used:      Y.4rt 
-Sample Time:   24 months 
+Expt. Time:    24 months 
 Chamber:       Ambient, Full Chamber 
 Fragmentation: Continuous, Full Corridors, Pseudo-Corridors, Isolated 
 Patches:       Inner, Outer 
 
-Tue Mar 29 16:36:42 2011
+Tue Mar 29 16:45:21 2011
 
 ================================================================
 ================  Patch scale Results  =========================