You can clone with
HTTPS or Subversion.
When capturing, for example, only channel group 1, the channel selectors in the tool dialogs do not reflect this. They still show channels 0..7, while they should be showing channels 8..15.
(reported by Eric D).
I suspect that this mis-labeling has the knock on effect of making the analyser tools not work. If I capture with 0.9.6 or 0.9.6.1 and use the SPI tool and mark the channels correctly then when I press analyse nothing happens. If I repeat the process with 0.9.5-b2 then I get a load of decoded symbols. Its as if the SPI tool really is looking at channels 1, 3 & 4 rather than 9, 12 & 13.