From 47a8ef4c3717ffa2ecb60c0cdd2231171ef4f082 Mon Sep 17 00:00:00 2001
From: John Lindsay <jlindsay@uoguelph.ca>
Date: Sat, 18 May 2024 20:15:02 -0400
Subject: [PATCH] Updates

---
 .github/workflows/build-wheels.yml |    4 +-
 Cargo.lock                         | 4679 +++++-----------------------
 Cargo.toml                         |    6 +-
 build.py                           |  325 +-
 4 files changed, 914 insertions(+), 4100 deletions(-)

diff --git a/.github/workflows/build-wheels.yml b/.github/workflows/build-wheels.yml
index 7462d809..c97423f1 100644
--- a/.github/workflows/build-wheels.yml
+++ b/.github/workflows/build-wheels.yml
@@ -12,7 +12,7 @@ jobs:
     strategy:
       matrix:
         # os: [ubuntu-latest, windows-latest, macOS-latest, ubuntu-20.04, ]
-        os: [windows-latest, macos-12, macOS-latest]
+        os: [ubuntu-latest, windows-latest, macos-12, macOS-latest]
         python-version: ['3.11']
 
     steps:
@@ -33,5 +33,5 @@ jobs:
       - name: Upload WBT
         uses: actions/upload-artifact@v4
         with:
-          name: wbt-${{ matrix.os }}-${{ matrix.python-version }}
+          name: wbt-${{ matrix.os }}
           path: zip_files/*.zip
diff --git a/Cargo.lock b/Cargo.lock
index 70163bbf..31073b56 100755
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -2,31 +2,6 @@
 # It is not intended for manual editing.
 version = 3
 
-[[package]]
-name = "ab_glyph"
-version = "0.2.25"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6f90148830dac590fac7ccfe78ec4a8ea404c60f75a24e16407a71f0f40de775"
-dependencies = [
- "ab_glyph_rasterizer",
- "owned_ttf_parser",
-]
-
-[[package]]
-name = "ab_glyph_rasterizer"
-version = "0.1.8"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c71b1793ee61086797f5c80b6efa2b8ffa6d5dd703f118545808a7f2e27f7046"
-
-[[package]]
-name = "addr2line"
-version = "0.21.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8a30b2e23b9e17a9f90641c7ab1549cd9b44f296d3ccbf309d2863cfe398a0cb"
-dependencies = [
- "gimli",
-]
-
 [[package]]
 name = "adler"
 version = "1.0.2"
@@ -39,31 +14,6 @@ version = "1.2.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "aae1277d39aeec15cb388266ecc24b11c80469deae6067e17a1a7aa9e5c1f234"
 
-[[package]]
-name = "aes"
-version = "0.8.4"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b169f7a6d4742236a0a00c541b845991d0ac43e546831af1249753ab4c3aa3a0"
-dependencies = [
- "cfg-if",
- "cipher",
- "cpufeatures",
-]
-
-[[package]]
-name = "ahash"
-version = "0.8.11"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e89da841a80418a9b391ebaea17f5c112ffaaa96f621d2c285b5174da76b9011"
-dependencies = [
- "cfg-if",
- "getrandom 0.2.8",
- "once_cell",
- "serde",
- "version_check",
- "zerocopy",
-]
-
 [[package]]
 name = "alga"
 version = "0.9.3"
@@ -99,12 +49,6 @@ dependencies = [
  "libc",
 ]
 
-[[package]]
-name = "anyhow"
-version = "1.0.83"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "25bdb32cbbdce2b519a9cd7df3a678443100e265d5e25ca763b7572a5104f5f3"
-
 [[package]]
 name = "approx"
 version = "0.3.2"
@@ -123,47 +67,6 @@ dependencies = [
  "num-traits",
 ]
 
-[[package]]
-name = "arboard"
-version = "2.1.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "dc120354d1b5ec6d7aaf4876b602def75595937b5e15d356eb554ab5177e08bb"
-dependencies = [
- "clipboard-win 4.5.0",
- "log",
- "objc",
- "objc-foundation",
- "objc_id",
- "parking_lot",
- "thiserror",
- "winapi",
- "x11rb 0.9.0",
-]
-
-[[package]]
-name = "arrayref"
-version = "0.3.7"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6b4930d2cb77ce62f89ee5d5289b4ac049559b1c45539271f5ed4fdc7db34545"
-
-[[package]]
-name = "arrayvec"
-version = "0.5.2"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "23b62fc65de8e4e7f52534fb52b0f3ed04746ae267519eef2a83941e8085068b"
-
-[[package]]
-name = "atk-sys"
-version = "0.15.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "58aeb089fb698e06db8089971c7ee317ab9644bade33383f63631437b03aafb6"
-dependencies = [
- "glib-sys",
- "gobject-sys",
- "libc",
- "system-deps",
-]
-
 [[package]]
 name = "atomic-polyfill"
 version = "0.1.11"
@@ -173,12 +76,6 @@ dependencies = [
  "critical-section",
 ]
 
-[[package]]
-name = "atomic_refcell"
-version = "0.1.13"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "41e67cd8309bbd06cd603a9e693a784ac2e5d1e955f11286e355089fcab3047c"
-
 [[package]]
 name = "autocfg"
 version = "0.1.7"
@@ -191,69 +88,12 @@ version = "1.0.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "cdb031dd78e28731d87d56cc8ffef4a8f36ca26c38fe2de700543e627f8a464a"
 
-[[package]]
-name = "backtrace"
-version = "0.3.71"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "26b05800d2e817c8b3b4b54abd461726265fa9789ae34330622f2db9ee696f9d"
-dependencies = [
- "addr2line",
- "cc",
- "cfg-if",
- "libc",
- "miniz_oxide 0.7.1",
- "object",
- "rustc-demangle",
-]
-
-[[package]]
-name = "base64"
-version = "0.21.7"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9d297deb1925b89f2ccc13d7635fa0714f12c87adce1c75356b39ca9b7178567"
-
-[[package]]
-name = "base64ct"
-version = "1.6.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8c3c1a368f70d6cf7302d78f8f7093da241fb8e8807c05cc9e51a125895a6d5b"
-
-[[package]]
-name = "bit_field"
-version = "0.10.2"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "dc827186963e592360843fb5ba4b973e145841266c1357f7180c43526f2e5b61"
-
 [[package]]
 name = "bitflags"
 version = "1.3.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "bef38d45163c2f1dde094a7dfd33ccf595c92905c8f8f4fdc18d06fb1037718a"
 
-[[package]]
-name = "bitflags"
-version = "2.5.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "cf4b9d6a944f767f8e5e0db018570623c85f3d925ac718db4e06d0187adb21c1"
-dependencies = [
- "serde",
-]
-
-[[package]]
-name = "block"
-version = "0.1.6"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "0d8c1fef690941d3e7788d328517591fecc684c084084702d6ff1641e993699a"
-
-[[package]]
-name = "block-buffer"
-version = "0.10.4"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "3078c7629b62d3f0439517fa394996acacc5cbc91c5a20d8c658e77abd503a71"
-dependencies = [
- "generic-array 0.14.7",
-]
-
 [[package]]
 name = "brotli"
 version = "3.3.0"
@@ -286,20 +126,6 @@ name = "bytemuck"
 version = "1.12.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "aaa3a8d9a1ca92e282c96a32d6511b695d7d994d1d102ba85d279f9b2756947f"
-dependencies = [
- "bytemuck_derive",
-]
-
-[[package]]
-name = "bytemuck_derive"
-version = "1.6.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "4da9a32f3fed317401fa3c862968128267c3106685286e15d5aaa3d7389c2f60"
-dependencies = [
- "proc-macro2",
- "quote",
- "syn 2.0.61",
-]
 
 [[package]]
 name = "byteorder"
@@ -307,12 +133,6 @@ version = "1.4.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "14c189c53d098945499cdfa7ecc63567cf3886b3332b312a5b4585d8d3a6a610"
 
-[[package]]
-name = "bytes"
-version = "1.6.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "514de17de45fdb8dc022b1a7975556c53c86f9f0aa5f534b98977b171857c2c9"
-
 [[package]]
 name = "bzip2"
 version = "0.3.3"
@@ -323,16 +143,6 @@ dependencies = [
  "libc",
 ]
 
-[[package]]
-name = "bzip2"
-version = "0.4.4"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "bdb116a6ef3f6c3698828873ad02c3014b3c85cadb88496095628e3ef1e347f8"
-dependencies = [
- "bzip2-sys",
- "libc",
-]
-
 [[package]]
 name = "bzip2-sys"
 version = "0.1.11+1.0.8"
@@ -344,61 +154,11 @@ dependencies = [
  "pkg-config",
 ]
 
-[[package]]
-name = "cairo-sys-rs"
-version = "0.15.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "3c55d429bef56ac9172d25fecb85dc8068307d17acd74b377866b7a1ef25d3c8"
-dependencies = [
- "libc",
- "system-deps",
-]
-
-[[package]]
-name = "calloop"
-version = "0.10.2"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "595eb0438b3c6d262395fe30e6de9a61beb57ea56290b00a07f227fe6e20cbf2"
-dependencies = [
- "log",
- "nix 0.24.3",
- "slotmap",
- "thiserror",
- "vec_map",
-]
-
-[[package]]
-name = "case"
-version = "1.0.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "fd6c0e7b807d60291f42f33f58480c0bfafe28ed08286446f45e463728cf9c1c"
-
 [[package]]
 name = "cc"
 version = "1.0.97"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "099a5357d84c4c61eb35fc8eafa9a79a902c2f76911e5747ced4e032edd8d9b4"
-dependencies = [
- "jobserver",
- "libc",
- "once_cell",
-]
-
-[[package]]
-name = "cesu8"
-version = "1.1.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6d43a04d8753f35258c91f8ec639f792891f748a1edbd759cf1dcea3382ad83c"
-
-[[package]]
-name = "cfg-expr"
-version = "0.15.8"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d067ad48b8650848b989a59a86c6c36a995d02d2bf778d45c3c5d57bc2718f02"
-dependencies = [
- "smallvec",
- "target-lexicon",
-]
 
 [[package]]
 name = "cfg-if"
@@ -406,15 +166,6 @@ version = "1.0.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd"
 
-[[package]]
-name = "cgl"
-version = "0.3.2"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "0ced0551234e87afee12411d535648dd89d2e7f34c78b753395567aff3d447ff"
-dependencies = [
- "libc",
-]
-
 [[package]]
 name = "chrono"
 version = "0.4.24"
@@ -430,99 +181,13 @@ dependencies = [
  "winapi",
 ]
 
-[[package]]
-name = "cipher"
-version = "0.4.4"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "773f3b9af64447d2ce9850330c473515014aa235e6a783b02db81ff39e4a3dad"
-dependencies = [
- "crypto-common",
- "inout",
-]
-
-[[package]]
-name = "clipboard-win"
-version = "3.1.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9fdf5e01086b6be750428ba4a40619f847eb2e95756eee84b18e06e5f0b50342"
-dependencies = [
- "lazy-bytes-cast",
- "winapi",
-]
-
-[[package]]
-name = "clipboard-win"
-version = "4.5.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "7191c27c2357d9b7ef96baac1773290d4ca63b24205b82a3fd8a0637afcf0362"
-dependencies = [
- "error-code",
- "str-buf",
- "winapi",
-]
-
 [[package]]
 name = "cloudabi"
 version = "0.0.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "ddfc5b9aa5d4507acaf872de71051dfd0e309860e88966e1051e462a077aac4f"
 dependencies = [
- "bitflags 1.3.2",
-]
-
-[[package]]
-name = "cmake"
-version = "0.1.50"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a31c789563b815f77f4250caee12365734369f942439b7defd71e18a48197130"
-dependencies = [
- "cc",
-]
-
-[[package]]
-name = "cocoa"
-version = "0.24.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f425db7937052c684daec3bd6375c8abe2d146dca4b8b143d6db777c39138f3a"
-dependencies = [
- "bitflags 1.3.2",
- "block",
- "cocoa-foundation",
- "core-foundation",
- "core-graphics 0.22.3",
- "foreign-types 0.3.2",
- "libc",
- "objc",
-]
-
-[[package]]
-name = "cocoa"
-version = "0.25.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f6140449f97a6e97f9511815c5632d84c8aacf8ac271ad77c559218161a1373c"
-dependencies = [
- "bitflags 1.3.2",
- "block",
- "cocoa-foundation",
- "core-foundation",
- "core-graphics 0.23.2",
- "foreign-types 0.5.0",
- "libc",
- "objc",
-]
-
-[[package]]
-name = "cocoa-foundation"
-version = "0.1.2"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8c6234cbb2e4c785b456c0644748b1ac416dd045799740356f8363dfe00c93f7"
-dependencies = [
- "bitflags 1.3.2",
- "block",
- "core-foundation",
- "core-graphics-types",
- "libc",
- "objc",
+ "bitflags",
 ]
 
 [[package]]
@@ -535,122 +200,18 @@ dependencies = [
  "unicode-width",
 ]
 
-[[package]]
-name = "color_quant"
-version = "1.1.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "3d7b894f5411737b7867f4827955924d7c254fc9f4d91a6aad6b097804b1018b"
-
-[[package]]
-name = "combine"
-version = "4.6.7"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "ba5a308b75df32fe02788e748662718f03fde005016435c444eea572398219fd"
-dependencies = [
- "bytes",
- "memchr",
-]
-
 [[package]]
 name = "const_fn"
 version = "0.4.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "28b9d6de7f49e22cf97ad17fc4036ece69300032f45f78f30b4a4482cdc3f4a6"
 
-[[package]]
-name = "constant_time_eq"
-version = "0.1.5"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "245097e9a4535ee1e3e3931fcfcd55a796a44c643e8596ff6566d68f09b87bbc"
-
-[[package]]
-name = "copypasta"
-version = "0.8.2"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "133fc8675ee3a4ec9aa513584deda9aa0faeda3586b87f7f0f2ba082c66fb172"
-dependencies = [
- "clipboard-win 3.1.1",
- "objc",
- "objc-foundation",
- "objc_id",
- "smithay-clipboard",
- "x11-clipboard",
-]
-
-[[package]]
-name = "core-foundation"
-version = "0.9.4"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "91e195e091a93c46f7102ec7818a2aa394e1e1771c3ab4825963fa03e45afb8f"
-dependencies = [
- "core-foundation-sys",
- "libc",
-]
-
 [[package]]
 name = "core-foundation-sys"
 version = "0.8.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "06ea2b9bc92be3c2baa9334a323ebca2d6f074ff852cd1d7b11064035cd3868f"
 
-[[package]]
-name = "core-graphics"
-version = "0.22.3"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "2581bbab3b8ffc6fcbd550bf46c355135d16e9ff2a6ea032ad6b9bf1d7efe4fb"
-dependencies = [
- "bitflags 1.3.2",
- "core-foundation",
- "core-graphics-types",
- "foreign-types 0.3.2",
- "libc",
-]
-
-[[package]]
-name = "core-graphics"
-version = "0.23.2"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c07782be35f9e1140080c6b96f0d44b739e2278479f64e02fdab4e32dfd8b081"
-dependencies = [
- "bitflags 1.3.2",
- "core-foundation",
- "core-graphics-types",
- "foreign-types 0.5.0",
- "libc",
-]
-
-[[package]]
-name = "core-graphics-types"
-version = "0.1.3"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "45390e6114f68f718cc7a830514a96f903cccd70d02a8f6d9f643ac4ba45afaf"
-dependencies = [
- "bitflags 1.3.2",
- "core-foundation",
- "libc",
-]
-
-[[package]]
-name = "core-text"
-version = "20.1.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c9d2790b5c08465d49f8dc05c8bcae9fea467855947db39b0f8145c091aaced5"
-dependencies = [
- "core-foundation",
- "core-graphics 0.23.2",
- "foreign-types 0.5.0",
- "libc",
-]
-
-[[package]]
-name = "cpufeatures"
-version = "0.2.12"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "53fe5e26ff1b7aef8bca9c6080520cfb8d9333c7568e1829cef191a9723e5504"
-dependencies = [
- "libc",
-]
-
 [[package]]
 name = "crc32fast"
 version = "1.4.0"
@@ -708,55 +269,10 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "248e3bacc7dc6baa3b21e405ee045c3047101a49145e7e9eca583ab4c2ca5345"
 
 [[package]]
-name = "crossfont"
-version = "0.5.2"
+name = "cxx"
+version = "1.0.91"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "3eb5a3822b594afc99b503cc1859b94686d3c3efdd60507a28587dab80ee1071"
-dependencies = [
- "cocoa 0.25.0",
- "core-foundation",
- "core-foundation-sys",
- "core-graphics 0.23.2",
- "core-text",
- "dwrote",
- "foreign-types 0.5.0",
- "freetype-rs",
- "libc",
- "log",
- "objc",
- "once_cell",
- "pkg-config",
- "servo-fontconfig",
- "winapi",
-]
-
-[[package]]
-name = "crunchy"
-version = "0.2.2"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "7a81dae078cea95a014a339291cec439d2f232ebe854a9d672b796c6afafa9b7"
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+version = "0.3.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "73ab332fe2f6680068f3582b16a24f90ad7096d5d39b974d1c0aff0125116f02"
+checksum = "77ce0ceee93c995954a31f77903925a6a8bb094709445238e344f2107910e29e"
 dependencies = [
- "simd-adler32",
+ "bzip2",
+ "flate2",
+ "msdos_time",
+ "podio",
+ "time 0.1.44",
 ]
diff --git a/Cargo.toml b/Cargo.toml
index 844741d9..c4f6003f 100755
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -1,6 +1,6 @@
 [workspace]
-members = ["whitebox-common", "whitebox-lidar", "whitebox-plugins", "whitebox-raster", "whitebox-runner", "whitebox-tools-app", "whitebox-vector"]
+members = ["whitebox-common", "whitebox-lidar", "whitebox-plugins", "whitebox-raster", "whitebox-tools-app", "whitebox-vector"]
 
 [profile.release]
-incremental = true
-strip = "debuginfo"
\ No newline at end of file
+    incremental = true
+    strip = true
\ No newline at end of file
diff --git a/build.py b/build.py
index 41aa8c64..1407ddba 100755
--- a/build.py
+++ b/build.py
@@ -4,168 +4,203 @@
 
 # To use this script:
 #
-# python3 build.py do_clean
+# python3 build.py do_clean exclude_runner zip
 #
-# Where 'do_clean' is true or false and determines whether or not to clean existing files first.
+# Where 'do_clean' is true or false and determines whether or not to clean existing files first;
+# 'exclude_runner' is true or false and determines whether the WhiteboxTools Runner app is excluded
+# from the build; and, 'create_zip_artifact' is true or false and determines whether a zip file
+# of the WBT folder is also created.
 #
 # You will need Rust installed before running the script. The output will be contained within a
 # folder named 'WBT'.
+#
+# Note that the WhiteboxTools Runner app will always be excluded from Linux builds.
 
+def build(do_clean=False, exclude_runner=False, create_zip_artifact=False):
+    # Set the directory variables
+    app_dir = os.path.dirname(os.path.abspath(__file__))
+    output_dir = os.path.join(app_dir, 'WBT')
+    output_plugin_dir = os.path.join(app_dir, 'WBT/plugins')
+    plugins_dir = os.path.join(app_dir, 'whitebox-plugins/src')
 
-# Set the directory variables
-app_dir = os.path.dirname(os.path.abspath(__file__))
-output_dir = os.path.join(app_dir, 'WBT')
-output_plugin_dir = os.path.join(app_dir, 'WBT/plugins')
-plugins_dir = os.path.join(app_dir, 'whitebox-plugins/src')
-
-target_dir = os.path.join(app_dir, 'target/release')
-if platform.system() == "Linux":
-    target_dir = os.path.join(app_dir, 'target/x86_64-unknown-linux-musl/release')
+    target_dir = os.path.join(app_dir, 'target/release')
+    if platform.system() == "Linux":
+        target_dir = os.path.join(app_dir, 'target/x86_64-unknown-linux-musl/release')
 
-if len(sys.argv) > 1:
-    if "t" in sys.argv[1].lower():
+    if do_clean:
         print("Cleaning old files...")
         result = subprocess.run(['cargo', 'clean'], stdout=subprocess.PIPE)
         if len(result.stdout) > 0:
             print(result.stdout)
 
-if os.path.exists(output_dir):
-    rmtree(output_dir)
-
-print("Compiling...")
-if platform.system() != 'Linux':
-    result = subprocess.run(['cargo', 'build', "--release"], stdout=subprocess.PIPE)
-    if len(result.stdout) > 0:
-        print(result.stdout)
-else:
-    print("Compiling for musl target...")
-    result = subprocess.run(['cargo', 'build', "--release", "--target=x86_64-unknown-linux-musl"], stdout=subprocess.PIPE)
-    if len(result.stdout) > 0:
-        print(result.stdout)
-
-if not os.path.exists(output_plugin_dir):
-    os.makedirs(output_plugin_dir)
-
-ext = ''
-if platform.system() == 'Windows':
-    ext = '.exe'
-
-# Copy the whitebox executable over
-exe_file = os.path.join(target_dir, 'whitebox_tools') + ext
-dst = os.path.join(output_dir, 'whitebox_tools') + ext
-copyfile(exe_file, dst)
-if platform.system() != 'Windows':
-    result = subprocess.run(['strip', dst], stdout=subprocess.PIPE)
-os.system("chmod 755 " + dst) # grant executable permission
-
-# Copy the ancillary files
-src = os.path.join(app_dir, 'LICENSE.txt')
-dst = os.path.join(output_dir, 'LICENSE.txt')
-copyfile(src, dst)
-
-src = os.path.join(app_dir, 'readme.txt')
-dst = os.path.join(output_dir, 'readme.txt')
-copyfile(src, dst)
-
-src = os.path.join(app_dir, 'settings.json')
-dst = os.path.join(output_dir, 'settings.json')
-copyfile(src, dst)
-
-src = os.path.join(app_dir, 'UserManual.txt')
-dst = os.path.join(output_dir, 'UserManual.txt')
-copyfile(src, dst)
-
-# if len(sys.argv) > 2:
-#     if "t" in sys.argv[2].lower():
-#         # Compile the Runner app
-#         runner_dir = os.path.join(app_dir, 'whitebox-runner')
-#         os.chdir(runner_dir)
-#         if platform.system() != 'Linux':
-#             result = subprocess.run(['cargo', 'build', "--release"], stdout=subprocess.PIPE)
-#             if len(result.stdout) > 0:
-#                 print(result.stdout)
-#         else:
-#             print("Compiling for musl target...")
-#             result = subprocess.run(['cargo', 'build', "--release", "--target=x86_64-unknown-linux-musl"], stdout=subprocess.PIPE)
-#             if len(result.stdout) > 0:
-#                 print(result.stdout)
-
-
-#         # Copy the Runner app
-#         runner_target_dir = os.path.join(runner_dir, 'target/release')
-#         if platform.system() == "Linux":
-#             runner_target_dir = os.path.join(runner_dir, 'target/x86_64-unknown-linux-musl/release')
-
-#         exe_file = os.path.join(runner_target_dir, 'whitebox_runner') + ext
-#         dst = os.path.join(output_dir, 'whitebox_runner') + ext
-#         copyfile(exe_file, dst)
-#         if platform.system() != 'Windows':
-#             result = subprocess.run(['strip', dst], stdout=subprocess.PIPE)
-#         os.system("chmod 755 " + dst) # grant executable 
-
-#         # Return to the app_dir
-#         os.chdir(app_dir)
-
- # Copy the Runner app
-exe_file = os.path.join(target_dir, 'whitebox_runner') + ext
-dst = os.path.join(output_dir, 'whitebox_runner') + ext
-copyfile(exe_file, dst)
-if platform.system() != 'Windows':
-    result = subprocess.run(['strip', dst], stdout=subprocess.PIPE)
-os.system("chmod 755 " + dst) # grant executable 
-
-src = os.path.join(app_dir, 'whitebox_tools.py')
-dst = os.path.join(output_dir, 'whitebox_tools.py')
-copyfile(src, dst)
-os.system("chmod 755 " + dst) # grant executable permission
-
-src = os.path.join(app_dir, 'img')
-dst = os.path.join(output_dir, 'img')
-copytree(src, dst)
-
-plugins = os.listdir(plugins_dir)
-for plugin in plugins:
-    if ".DS" not in plugin and "._" not in plugin:
-        print(f'Copying plugin: {plugin}')
-
-        # Copy the json file into the plugins directory
-        json_file = os.path.join(plugins_dir, plugin, plugin) + '.json'
-        dst = os.path.join(output_plugin_dir, plugin) + '.json'
-        copyfile(json_file, dst)
+    if os.path.exists(output_dir):
+        rmtree(output_dir)
 
-        # Copy the executable file into the plugins directory
-        exe_file = os.path.join(target_dir, plugin) + ext
-        dst = os.path.join(output_plugin_dir, plugin) + ext
-        copyfile(exe_file, dst)
-        if platform.system() != 'Windows':
-            print("Stripping", plugin)
-            result = subprocess.run(['strip', dst], stdout=subprocess.PIPE)
-            # print(result)
 
-        os.system("chmod 755 " + dst) # grant executable permission
+    # Create the Cargo.toml file
+    workspace_str = '[workspace]\nmembers = ["whitebox-common", "whitebox-lidar", "whitebox-plugins", "whitebox-raster", "whitebox-runner", "whitebox-tools-app", "whitebox-vector"]\n\n'
+    if exclude_runner or platform.system() == 'Linux':
+        # Exclude the runner if the second command line arg is set to True or if the platform is linux
+        workspace_str = '[workspace]\nmembers = ["whitebox-common", "whitebox-lidar", "whitebox-plugins", "whitebox-raster", "whitebox-tools-app", "whitebox-vector"]\n\n'
 
-# Copy the register_license binary into the plugins folder if it is available
-os.chdir(app_dir)
-if os.path.exists('../GeneralToolsetExtension'):
-    # Copy the executable file into the plugins directory
-    exe_file = f"../GeneralToolsetExtension/register_license{ext}"
-    if os.path.exists(exe_file):
-        dst = os.path.join(output_plugin_dir, 'register_license') + ext
-        copyfile(exe_file, dst)
-        os.system("chmod 755 " + dst) # grant executable permission
+    with open('Cargo.toml', "w") as cargo_file:
+        cargo_file.write(workspace_str)
+        
+        cargo_file.write("""[profile.release]
+    incremental = true
+    strip = true""")
+
+
+    print("Compiling...")
+    if platform.system() != 'Linux':
+        result = subprocess.run(['cargo', 'build', "--release"], stdout=subprocess.PIPE)
+        if len(result.stdout) > 0:
+            print(result.stdout)
     else:
-        print("No register_license file found...")
-else:
-    print("No directory containing the register_license file found...")
+        print("Compiling for musl target...")
+        result = subprocess.run(['cargo', 'build', "--release", "--target=x86_64-unknown-linux-musl"], stdout=subprocess.PIPE)
+        if len(result.stdout) > 0:
+            print(result.stdout)
+
+    if not os.path.exists(output_plugin_dir):
+        os.makedirs(output_plugin_dir)
+
+    ext = ''
+    if platform.system() == 'Windows':
+        ext = '.exe'
+
+    # Copy the whitebox executable over
+    exe_file = os.path.join(target_dir, 'whitebox_tools') + ext
+    dst = os.path.join(output_dir, 'whitebox_tools') + ext
+    copyfile(exe_file, dst)
+    if platform.system() != 'Windows':
+        result = subprocess.run(['strip', dst], stdout=subprocess.PIPE)
+    os.system("chmod 755 " + dst) # grant executable permission
+
+    # Copy the ancillary files
+    src = os.path.join(app_dir, 'LICENSE.txt')
+    dst = os.path.join(output_dir, 'LICENSE.txt')
+    copyfile(src, dst)
 
+    src = os.path.join(app_dir, 'readme.txt')
+    dst = os.path.join(output_dir, 'readme.txt')
+    copyfile(src, dst)
 
-# Make a zip of the WBT folder
-print("Creating zip artifact...")
-proc = "amd64"
-if "arm" in proc and "darwin" in platform.system():
-    proc = "m_series"
+    src = os.path.join(app_dir, 'settings.json')
+    dst = os.path.join(output_dir, 'settings.json')
+    copyfile(src, dst)
 
-output_zip = os.path.join(app_dir, "zip_files", f"WhiteboxTools_{platform.system()}_{proc}")
-make_archive(output_zip, 'zip', output_dir)
+    src = os.path.join(app_dir, 'UserManual.txt')
+    dst = os.path.join(output_dir, 'UserManual.txt')
+    copyfile(src, dst)
 
-print("Done!")
\ No newline at end of file
+    # If the Runner app exists, copy it
+    exe_file = os.path.join(target_dir, 'whitebox_runner') + ext
+    if os.path.exists(exe_file):
+        dst = os.path.join(output_dir, 'whitebox_runner') + ext
+        copyfile(exe_file, dst)
+        if platform.system() != 'Windows':
+            result = subprocess.run(['strip', dst], stdout=subprocess.PIPE)
+        os.system("chmod 755 " + dst) # grant executable 
+
+    src = os.path.join(app_dir, 'whitebox_tools.py')
+    dst = os.path.join(output_dir, 'whitebox_tools.py')
+    copyfile(src, dst)
+    os.system("chmod 755 " + dst) # grant executable permission
+
+    src = os.path.join(app_dir, 'img')
+    dst = os.path.join(output_dir, 'img')
+    copytree(src, dst)
+
+    plugins = os.listdir(plugins_dir)
+    for plugin in plugins:
+        if ".DS" not in plugin and "._" not in plugin:
+            print(f'Copying plugin: {plugin}')
+
+            # Copy the json file into the plugins directory
+            json_file = os.path.join(plugins_dir, plugin, plugin) + '.json'
+            dst = os.path.join(output_plugin_dir, plugin) + '.json'
+            copyfile(json_file, dst)
+
+            # Copy the executable file into the plugins directory
+            exe_file = os.path.join(target_dir, plugin) + ext
+            dst = os.path.join(output_plugin_dir, plugin) + ext
+            copyfile(exe_file, dst)
+            if platform.system() != 'Windows':
+                print("Stripping", plugin)
+                result = subprocess.run(['strip', dst], stdout=subprocess.PIPE)
+                # print(result)
+
+            os.system("chmod 755 " + dst) # grant executable permission
+
+    # Copy the register_license binary into the plugins folder if it is available
+    os.chdir(app_dir)
+    if os.path.exists('../GeneralToolsetExtension'):
+        # Copy the executable file into the plugins directory
+        exe_file = f"../GeneralToolsetExtension/register_license{ext}"
+        if os.path.exists(exe_file):
+            dst = os.path.join(output_plugin_dir, 'register_license') + ext
+            copyfile(exe_file, dst)
+            os.system("chmod 755 " + dst) # grant executable permission
+        else:
+            print("No register_license file found...")
+    else:
+        print("No directory containing the register_license file found...")
+
+
+    if create_zip_artifact:
+        # Make a zip of the WBT folder
+        print("Creating zip artifact...")
+        proc = "amd64"
+        if "arm" in platform.processor().lower() and "darwin" in platform.system().lower():
+            proc = "m_series"
+
+        zip_name = f"WhiteboxTools_{platform.system().lower()}_{proc}"
+        output_zip = os.path.join(app_dir, zip_name, "WBT")
+        copytree(output_dir, output_zip, dirs_exist_ok=True)
+        output_zip = os.path.join(app_dir, zip_name)
+        
+        with open(os.path.join(output_zip, 'readme.txt'), "w") as readme_file:
+            readme_file.write("""Instructions:
+
+    Copy the WBT folder and its entire contents to any location on your system. Configure your Whitebox
+    frontend, whether that is the QGIS or ArcGIS plugin, or the Python package, to point to this WBT
+    folder location. To access the functionality of WhiteboxTools without the need for a 3rd party
+    frontend, launch the WhiteboxTools Runner app (whitebox_runner), if it is contained within the WBT 
+    folder.""")
+
+        make_archive(output_zip, 'zip', output_zip)
+
+        # Delete the folder
+        if os.path.exists(output_zip):
+            rmtree(output_zip)
+
+    print("Done!")
+
+def main():
+    # Read in the script arguments
+    do_clean = False
+    if any("do_clean" in s for s in sys.argv):
+        matching = [s for s in sys.argv if "do_clean" in s]
+        if len(matching) > 0:
+            if "false" not in matching[0].lower():
+                do_clean = True
+
+    exclude_runner = False
+    if any("exclude_runner" in s for s in sys.argv):
+        matching = [s for s in sys.argv if "exclude_runner" in s]
+        if len(matching) > 0:
+            if "false" not in matching[0].lower():
+                exclude_runner = True
+
+    create_zip_artifact = False
+    if any("zip" in s for s in sys.argv):
+        matching = [s for s in sys.argv if "zip" in s]
+        if len(matching) > 0:
+            if "false" not in matching[0].lower():
+                create_zip_artifact = True
+    
+    build(do_clean, exclude_runner, create_zip_artifact)
+
+if __name__ == "__main__":
+    main()
\ No newline at end of file