manuscript for deep mutational scanning of Perth/2009 H3N2 HA
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jbloom add unpassaged sequence files
Previously repo was missing `*.json.gz` files for
unpassaged sequences in data, so couldn't run
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Deep mutational scanning of the A/Perth/16/2009(H3N2) HA. Study by Juhye Lee, John Huddleston, Mike Doud, Katie Hooper, Nicholas Wu, Trevor Bedford, and Jesse Bloom.

A pre-print describing this study is available on bioRxiv at DOI 10.1101/298364.


This repository is organized into the following subdirectories:

  • ./paper/ contains the paper describing this analysis and results. This directory also contains a figs subdirectory that contains all of the figures in the paper.

  • ./analysis_code/ contains Jupyter notebooks that perform all the analyses, as well as necessary input data files.

  • ./lab_notes/ contains lab notebooks describing the experiments in the paper.