{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":410712763,"defaultBranch":"main","name":"polyclonal","ownerLogin":"jbloomlab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2021-09-27T02:07:08.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/17679492?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1706649844.0","currentOid":""},"activityList":{"items":[{"before":"c19238a5ce2407c7fe4ac9fd19e2aa15a2b4db43","after":"9fd68d0b2584a02f2151a35730fc692055dba863","ref":"refs/heads/gh-pages","pushedAt":"2024-01-30T21:31:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jbloom","name":"Jesse Bloom","path":"/jbloom","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1906801?s=80&v=4"},"commit":{"message":"docs for version 6.11","shortMessageHtmlLink":"docs for version 6.11"}},{"before":"e54c4c34480844d4356dc409ab9fc0a39a207618","after":null,"ref":"refs/heads/plot-abs-site-stats","pushedAt":"2024-01-30T21:00:16.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jbloom","name":"Jesse Bloom","path":"/jbloom","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1906801?s=80&v=4"}},{"before":"917a0805619b9a843a24f77debe5dacaf541efb1","after":"82b3923a762894d1c4ebcb101c90211a5d553063","ref":"refs/heads/main","pushedAt":"2024-01-30T21:00:13.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"jbloom","name":"Jesse Bloom","path":"/jbloom","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1906801?s=80&v=4"},"commit":{"message":"add `mean_abs` and `sum_abs` to `lineplot_and_heatmap` (#183)\n\nAllows display of site statistics reflecting the mean and sum of the absolute values of the mutation values.\r\n\r\nAlso, update GitHub actions and lint/format with newer versions of `black` and `ruff`.","shortMessageHtmlLink":"add mean_abs and sum_abs to lineplot_and_heatmap (#183)"}},{"before":"03a5576934f8ad4fb8feb612783d16a6949b3563","after":"e54c4c34480844d4356dc409ab9fc0a39a207618","ref":"refs/heads/plot-abs-site-stats","pushedAt":"2024-01-30T18:52:30.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jbloom","name":"Jesse Bloom","path":"/jbloom","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1906801?s=80&v=4"},"commit":{"message":"update GitHub actions versions for testing","shortMessageHtmlLink":"update GitHub actions versions for testing"}},{"before":null,"after":"03a5576934f8ad4fb8feb612783d16a6949b3563","ref":"refs/heads/plot-abs-site-stats","pushedAt":"2024-01-30T00:43:01.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jbloom","name":"Jesse Bloom","path":"/jbloom","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1906801?s=80&v=4"},"commit":{"message":"add `mean_abs` and `sum_abs` to `lineplot_and_heatmap`\n\nAllows display of site statistics reflecting the mean and sum of the absolute values of the mutation values.","shortMessageHtmlLink":"add mean_abs and sum_abs to lineplot_and_heatmap"}},{"before":"87e1682f044c432e1642ee4ba1b412d824379f48","after":"c19238a5ce2407c7fe4ac9fd19e2aa15a2b4db43","ref":"refs/heads/gh-pages","pushedAt":"2024-01-26T20:55:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jbloom","name":"Jesse Bloom","path":"/jbloom","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1906801?s=80&v=4"},"commit":{"message":"docs for version 6.10","shortMessageHtmlLink":"docs for version 6.10"}},{"before":"3961db379a85593f280a30feafeade9ac0d0bb31","after":null,"ref":"refs/heads/adjust-heatmap-hide-not-filter","pushedAt":"2024-01-26T20:43:13.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jbloom","name":"Jesse Bloom","path":"/jbloom","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1906801?s=80&v=4"}},{"before":"6803e4896ca75ce10096abc1c31ea480c76c36a2","after":"917a0805619b9a843a24f77debe5dacaf541efb1","ref":"refs/heads/main","pushedAt":"2024-01-26T20:43:10.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"jbloom","name":"Jesse Bloom","path":"/jbloom","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1906801?s=80&v=4"},"commit":{"message":"improve stat hiding filters in `lineplot_and_heatmap` (#182)\n\nIn `lineplot_and_heatmap`, mutations that are hidden are by one slider filtered even if they fail other sliders.\r\n\r\nPreviously, they were dropped rather than hidden.\r\n\r\nAddresses this issue: https://github.com/dms-vep/dms-vep-pipeline-3/issues/96","shortMessageHtmlLink":"improve stat hiding filters in lineplot_and_heatmap (#182)"}},{"before":"1246a92ef69d70de18b025e7a0222119c69ea0d8","after":"3961db379a85593f280a30feafeade9ac0d0bb31","ref":"refs/heads/adjust-heatmap-hide-not-filter","pushedAt":"2024-01-26T20:22:11.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jbloom","name":"Jesse Bloom","path":"/jbloom","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1906801?s=80&v=4"},"commit":{"message":"fix test to pass `nbval`","shortMessageHtmlLink":"fix test to pass nbval"}},{"before":"dae998c71e1d308c5f94ab1581911fb0092ca955","after":"1246a92ef69d70de18b025e7a0222119c69ea0d8","ref":"refs/heads/adjust-heatmap-hide-not-filter","pushedAt":"2024-01-26T17:29:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jbloom","name":"Jesse Bloom","path":"/jbloom","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1906801?s=80&v=4"},"commit":{"message":"add `pyarrow` as dependency","shortMessageHtmlLink":"add pyarrow as dependency"}},{"before":"1cba2b94f68f706a48cc71db0b22258d09360346","after":"dae998c71e1d308c5f94ab1581911fb0092ca955","ref":"refs/heads/adjust-heatmap-hide-not-filter","pushedAt":"2024-01-26T16:56:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jbloom","name":"Jesse Bloom","path":"/jbloom","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1906801?s=80&v=4"},"commit":{"message":"`black` formatting","shortMessageHtmlLink":"black formatting"}},{"before":null,"after":"1cba2b94f68f706a48cc71db0b22258d09360346","ref":"refs/heads/adjust-heatmap-hide-not-filter","pushedAt":"2024-01-26T16:51:58.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jbloom","name":"Jesse Bloom","path":"/jbloom","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1906801?s=80&v=4"},"commit":{"message":"improve stat hiding filters in `lineplot_and_heatmap`\n\nIn `lineplot_and_heatmap`, mutations that are hidden are by one slider filtered even if they fail other sliders.\n\nPreviously, they were dropped rather than hidden.\n\nAddresses this issue: https://github.com/dms-vep/dms-vep-pipeline-3/issues/96","shortMessageHtmlLink":"improve stat hiding filters in lineplot_and_heatmap"}},{"before":"01686d13d3099e5e9cf1f17fa29fee36ebf006f0","after":"87e1682f044c432e1642ee4ba1b412d824379f48","ref":"refs/heads/gh-pages","pushedAt":"2023-10-18T12:02:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jbloom","name":"Jesse Bloom","path":"/jbloom","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1906801?s=80&v=4"},"commit":{"message":"docs for version 6.9","shortMessageHtmlLink":"docs for version 6.9"}},{"before":"213e984647d1824d14adf2fac2a2215ae700a258","after":null,"ref":"refs/heads/180-rename-stat-col-in-plot","pushedAt":"2023-10-18T11:56:22.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jbloom","name":"Jesse Bloom","path":"/jbloom","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1906801?s=80&v=4"}},{"before":"80099400d46c7b006f699c39a288520c930eca50","after":"6803e4896ca75ce10096abc1c31ea480c76c36a2","ref":"refs/heads/main","pushedAt":"2023-10-18T11:56:19.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"jbloom","name":"Jesse Bloom","path":"/jbloom","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1906801?s=80&v=4"},"commit":{"message":"Added `rename_std` option to `lineplot_and_heatmaps` (#181)\n\nFixes a quasi-bug introduced in the ``rename_stat_col`` option by the changes in version 6.8.","shortMessageHtmlLink":"Added rename_std option to lineplot_and_heatmaps (#181)"}},{"before":null,"after":"213e984647d1824d14adf2fac2a2215ae700a258","ref":"refs/heads/180-rename-stat-col-in-plot","pushedAt":"2023-10-17T23:54:39.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jbloom","name":"Jesse Bloom","path":"/jbloom","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1906801?s=80&v=4"},"commit":{"message":"Added `rename_std` option to `lineplot_and_heatmaps`\n\nFixes a quasi-bug introduced in the ``rename_stat_col`` option by the changes in version 6.8.","shortMessageHtmlLink":"Added rename_std option to lineplot_and_heatmaps"}},{"before":"191ce769576088c64d5cf3c2d1fca12fe6c45c0f","after":"01686d13d3099e5e9cf1f17fa29fee36ebf006f0","ref":"refs/heads/gh-pages","pushedAt":"2023-10-17T12:35:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jbloom","name":"Jesse Bloom","path":"/jbloom","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1906801?s=80&v=4"},"commit":{"message":"docs for version 6.8","shortMessageHtmlLink":"docs for version 6.8"}},{"before":"d7ef92bbfac30b19e3daf4a7565450e3f7569dd0","after":null,"ref":"refs/heads/filter-by-std","pushedAt":"2023-10-17T12:30:53.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jbloom","name":"Jesse Bloom","path":"/jbloom","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1906801?s=80&v=4"}},{"before":"efafbd7764b5fcdd667315cce296361cd72ed5a7","after":"80099400d46c7b006f699c39a288520c930eca50","ref":"refs/heads/main","pushedAt":"2023-10-17T12:30:49.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"jbloom","name":"Jesse Bloom","path":"/jbloom","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1906801?s=80&v=4"},"commit":{"message":"enabling filtering of plots by standard deviation of measurements (#179)\n\n* Add `addtl_slider_stats_as_max` to `lineplot_and_heatmap`\r\n\r\n* Show *escape_std* in `PolyclonalCollection.mut_escape_plot`\r\n\r\n* switch sliders in `lineplot_and_heatmap` to be params rather than selection_point\r\n\r\n* Show *escape_std* in `PolyclonalCollection.mut_icXX_plot`\r\n\r\n* re-run notebooks\r\n\r\n* bug fix in adding std to `PolyclonalCollections.mut_icXX_plot`\r\n\r\n* `applymap` is deprecated, fix doctest\r\n\r\n* fix typo in `polyclonal` doctest\r\n\r\n* fix test to address `pandas` warning","shortMessageHtmlLink":"enabling filtering of plots by standard deviation of measurements (#179)"}},{"before":"8d6f2f8452f9886c2cc89e643ff541b58c87f458","after":"d7ef92bbfac30b19e3daf4a7565450e3f7569dd0","ref":"refs/heads/filter-by-std","pushedAt":"2023-10-17T12:06:31.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jbloom","name":"Jesse Bloom","path":"/jbloom","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1906801?s=80&v=4"},"commit":{"message":"fix test to address `pandas` warning","shortMessageHtmlLink":"fix test to address pandas warning"}},{"before":"aa56a0d225955222415ae2efa94b1ab0c0bab559","after":"8d6f2f8452f9886c2cc89e643ff541b58c87f458","ref":"refs/heads/filter-by-std","pushedAt":"2023-10-17T04:50:13.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jbloom","name":"Jesse Bloom","path":"/jbloom","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1906801?s=80&v=4"},"commit":{"message":"`applymap` is deprecated, fix doctest","shortMessageHtmlLink":"applymap is deprecated, fix doctest"}},{"before":"aac79ccd62d5ccba929acb2d0a71d06eab73ea81","after":"aa56a0d225955222415ae2efa94b1ab0c0bab559","ref":"refs/heads/filter-by-std","pushedAt":"2023-10-17T03:43:13.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"jbloom","name":"Jesse Bloom","path":"/jbloom","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1906801?s=80&v=4"},"commit":{"message":"re-run notebooks","shortMessageHtmlLink":"re-run notebooks"}},{"before":null,"after":"aac79ccd62d5ccba929acb2d0a71d06eab73ea81","ref":"refs/heads/filter-by-std","pushedAt":"2023-10-16T21:44:57.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jbloom","name":"Jesse Bloom","path":"/jbloom","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1906801?s=80&v=4"},"commit":{"message":"Add `addtl_slider_stats_as_max` to `lineplot_and_heatmap`","shortMessageHtmlLink":"Add addtl_slider_stats_as_max to lineplot_and_heatmap"}},{"before":"b630f452042bdf8660386e970a03acdd943b1f67","after":"191ce769576088c64d5cf3c2d1fca12fe6c45c0f","ref":"refs/heads/gh-pages","pushedAt":"2023-08-18T22:48:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jbloom","name":"Jesse Bloom","path":"/jbloom","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1906801?s=80&v=4"},"commit":{"message":"docs for `polyclonal` 6.7","shortMessageHtmlLink":"docs for polyclonal 6.7"}},{"before":"241a80134d32bb35b63f777190c8e8c2e769eee2","after":"efafbd7764b5fcdd667315cce296361cd72ed5a7","ref":"refs/heads/main","pushedAt":"2023-08-18T22:39:06.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"jbloom","name":"Jesse Bloom","path":"/jbloom","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1906801?s=80&v=4"},"commit":{"message":"Ensure that wildtype identity is always shown in heatmap tooltips even if mutation is filtered. (#178)","shortMessageHtmlLink":"Ensure that wildtype identity is always shown in heatmap tooltips eve…"}},{"before":null,"after":"ed875ed4bb4cce96b3bea2c128bcb5e6495a0639","ref":"refs/heads/heatmap_tooltip_wt","pushedAt":"2023-08-18T22:10:12.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jbloom","name":"Jesse Bloom","path":"/jbloom","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1906801?s=80&v=4"},"commit":{"message":"Ensure that wildtype identity is always shown in heatmap tooltips even if mutation is filtered.","shortMessageHtmlLink":"Ensure that wildtype identity is always shown in heatmap tooltips eve…"}},{"before":"8d9ab7a555b751e82b8b7df04249236b0d36f852","after":null,"ref":"refs/heads/heatmap_lims_from_slider_init","pushedAt":"2023-08-18T20:22:24.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jbloom","name":"Jesse Bloom","path":"/jbloom","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1906801?s=80&v=4"}},{"before":"049419cf139fa71857c7e13d0deccd05fafdf22f","after":"241a80134d32bb35b63f777190c8e8c2e769eee2","ref":"refs/heads/main","pushedAt":"2023-08-18T20:22:22.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"jbloom","name":"Jesse Bloom","path":"/jbloom","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1906801?s=80&v=4"},"commit":{"message":"improve heatmap limits (#177)\n\n* Add `heatmap_lims_from_slider_init` option to `lineplot_and_heatmap`\r\n\r\n* Set default `floor_at_zero` for `mut_icXX_plot` to be `True` like for other plots\r\n\r\n* code formatting\r\n\r\n* re-run notebooks","shortMessageHtmlLink":"improve heatmap limits (#177)"}},{"before":null,"after":"8d9ab7a555b751e82b8b7df04249236b0d36f852","ref":"refs/heads/heatmap_lims_from_slider_init","pushedAt":"2023-08-18T19:39:30.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jbloom","name":"Jesse Bloom","path":"/jbloom","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1906801?s=80&v=4"},"commit":{"message":"re-run notebooks","shortMessageHtmlLink":"re-run notebooks"}},{"before":"ee1a9cbe4c17c0c74d23014e39d4ba97e8155d10","after":"049419cf139fa71857c7e13d0deccd05fafdf22f","ref":"refs/heads/main","pushedAt":"2023-08-14T04:53:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jbloom","name":"Jesse Bloom","path":"/jbloom","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1906801?s=80&v=4"},"commit":{"message":"fix error message to be more helpful","shortMessageHtmlLink":"fix error message to be more helpful"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAD7Wj8XAA","startCursor":null,"endCursor":null}},"title":"Activity · jbloomlab/polyclonal"}