This repository hosts jupyter notebooks for that cover basics of fMRI preprocessing and analyses.
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README.md

README.md

psyc60

This repository hosts jupyter notebooks for that cover basics of fMRI preprocessing and analyses.

Instructors: Jeremy Huckins & Jin Hyun Cheong

Lab 01: Navigating the terminal and viewing a brain using fsl/spm/afni.
In this lab we cover the basics of ssh logging into a cluster server and using a VNC environment. We learn about basic shell commands that can be used for navigating the terminal. We launch different fMRI analysis softwares, FSL, SPM, and AFNI, for interactive viewing of brain images.

Lab 02: fMRI preprocessing

Videos for SPM preprocessing.

Lab 03: GLM analysis (in prep)

[Lab 04: Advanced methods (in prep)]

[Lab 05: Other programs (in prep)]

Links to videos to help understand concepts of fMRI

Basic concept of fMRI & history

Explanation of k-space and image through FT

Other resources

http://mriquestions.com/index.html

https://practicalfmri.blogspot.com/

Intro to MR physics with good figures

Explanation of MRI with good figures