Skip to content

HTTPS clone URL

Subversion checkout URL

You can clone with HTTPS or Subversion.

Download ZIP
Scientific formulae for the Homebrew package manager

This branch is 933 commits behind Homebrew:master

Fetching latest commit…

Cannot retrieve the latest commit at this time

Failed to load latest commit information.
CONTRIBUTING.md
README.md
abyss-explorer.rb
abyss.rb
adam.rb
adol-c.rb
alembic.rb
allpaths-lg.rb
amos.rb
analysis.rb
ann.rb
aragorn.rb
armadillo.rb
arow++.rb
arpack.rb
asl.rb
astrometry-net.rb
atpdec.rb
atram.rb
augustus.rb
bact.rb
bali-phy.rb
bam-readcount.rb
bamtools.rb
bamutil.rb
barrnap.rb
bcftools.rb
beagle.rb
beast.rb
bedops.rb
bedtools.rb
beetl.rb
bioawk.rb
biocgal.rb
biopieces.rb
bitseq.rb
blasr.rb
blast.rb
blat.rb
bowtie.rb
bowtie2.rb
bpel2owfn.rb
bwa.rb
bwtdisk.rb
cantera.rb
cap3.rb
ccfits.rb
cd-hit.rb
cddlib.rb
cdo.rb
cdsclient.rb
cegma.rb
celera-assembler.rb
ceres-solver.rb
cerulean.rb
cgap.rb
cgns.rb
circos.rb
clustal-omega.rb
clustal-w.rb
cminpack.rb
cmor.rb
coinmp.rb
coinutils.rb
colpack.rb
consed.rb
corset.rb
cppad.rb
crfsuite.rb
cuba.rb
cube.rb
cufflinks.rb
cvblob.rb
dadadodo.rb
daligner.rb
data-science-toolbox.rb
delly.rb
dotwrp.rb
dsk.rb
dssp.rb
edena.rb
edirect.rb
elemental.rb
elph.rb
emboss.rb
enblend-enfuse.rb
ensembl-tools.rb
exonerate.rb
fann.rb
fast-statistical-alignment.rb
fasta.rb
fastq-tools.rb
fastqc.rb
fasttree.rb
fastx_toolkit.rb
fcgene.rb
fermi.rb
field3d.rb
flann.rb
fsa.rb
fwdpp.rb
gaemr.rb
gal-sim.rb
galfit.rb
galib.rb
gdcm.rb
geant.rb
geneid.rb
genet.rb
genewise.rb
genometools.rb
getdp.rb
gfan.rb
giira.rb
glimmer3.rb
glimmerhmm.rb
glpk.rb
gmap-gsnap.rb
gmcloser.rb
gmsh.rb
gmt.rb
gmt4.rb
graph-tool.rb
gromacs.rb
gtsam.rb
h5utils.rb
hdf5.rb
healpix.rb
hlaminer.rb
hmmer.rb
hmmer2.rb
hopdm.rb
hotspot.rb
htqc.rb
htslib.rb
hwloc.rb
hyphy.rb
hypre.rb
idba.rb
idcoefs.rb
igraph.rb
igv.rb
igvtools.rb
infernal.rb
insighttoolkit.rb
ipopt.rb
jblas.rb
jellyfish-1.1.rb
jellyfish.rb
joinx.rb
kalign.rb
kat.rb
kissplice.rb
kmergenie.rb
kmerstream.rb
kraken.rb
lammps.rb
lapack-manpages.rb
last.rb
lastz.rb
libccd.rb
libgpkg.rb
liblbfgs.rb
libmatio.rb
libpll.rb
libsequence.rb
lightstringgraph.rb
lis.rb
littler.rb
lola.rb
lp_solve.rb
lumpy-sv.rb
madlib.rb
mafft.rb
maker.rb
mallet.rb
masurca.rb
mathgl.rb
mathomatic.rb
maxima.rb
mbsystem.rb
mcl.rb
megam.rb
meme.rb
methpipe.rb
metis.rb
metis4.rb
minc.rb
minia.rb
mir-prefer.rb
mira.rb
mitofy.rb
mlpack.rb
moab.rb
mpsolve.rb
mrbayes.rb
mrfast.rb
mtl.rb
mummer.rb
mumps.rb
muscle.rb
musket.rb
nauty.rb
ncl.rb
nco.rb
ncview.rb
netcdf.rb
nextflow.rb
nexusformat.rb
nfft.rb
niftilib.rb
nlopt.rb
nonpareil.rb
novoalign.rb
nusmv.rb
oce.rb
octave.rb
ogdraw.rb
openblas.rb
openbr.rb
opencascade.rb
opencv.rb
openfst.rb
opengrm-ngram.rb
opengrm-thrax.rb
openimageio.rb
openmeeg.rb
openni.rb
openni2.rb
orocos-kdl.rb
osgearth.rb
paml.rb
parmetis.rb
pastix.rb
pbsuite.rb
pcap.rb
pcl.rb
pear.rb
perf.rb
petsc.rb
phlawd.rb
phylip.rb
phyml.rb
picard-tools.rb
piler.rb
platanus.rb
plink.rb
pmw.rb
pnapi.rb
pocl.rb
populations.rb
prank.rb
primer3.rb
prodigal.rb
prokka.rb
proverif.rb
pspp.rb
pykep.rb
pymol.rb
qcl.rb
qgis.rb
qhull.rb
qrupdate.rb
quake.rb
qualimap.rb
quast.rb
quicktree.rb
quip.rb
r-gui.rb
r.rb
radx.rb
rainbow.rb
rampart.rb
raxml.rb
ray.rb
reapr.rb
recon.rb
repeatmasker.rb
repeatmodeler.rb
repeatscout.rb
rmblast.rb
rml-mmc.rb
root.rb
ropebwt.rb
ropebwt2.rb
sailfish.rb
sais.rb
samtools.rb
sara.rb
scalapack.rb
scarpa.rb
scotch.rb
scotch5.rb
seq-gen.rb
seqan.rb
seqdb.rb
seqtk.rb
sextractor.rb
sfscode.rb
sga.rb
shogun.rb
sickle.rb
slepc.rb
slicot.rb
sllib.rb
smrtanalysis.rb
snap.rb
snid.rb
snoscan.rb
snp_sites.rb
snpeff.rb
soapdenovo.rb
spades.rb
spatialite-gis.rb
sratoolkit.rb
ssake.rb
sspace-longread.rb
stacks.rb
suite-sparse.rb
sundials.rb
superlu.rb
swetest.rb
swrcfit.rb
symphony.rb
t-coffee.rb
tabix.rb
tabtk.rb
tao.rb
tasr.rb
tbl2asn.rb
tetgen.rb
therion.rb
tisean.rb
tmv-cpp.rb
topcat.rb
tophat.rb
trans-abyss.rb
transtermhp.rb
trf.rb
triangle.rb
trilinos.rb
trinity.rb
trnascan.rb
ucsc-genome-browser.rb
unafold.rb
uniqtag.rb
utgb.rb
vcftools.rb
veclibfort.rb
velvet.rb
velvetoptimiser.rb
viennarna.rb
vigra.rb
vips.rb
vislcg3.rb
voro++.rb
vtk.rb
vtk5.rb
wcslib.rb
wcstools.rb
wxmaxima.rb
xmgredit.rb
xylib.rb
yaha.rb
z3.rb
zoltan.rb

README.md

Homebrew-science

For science.

These formulae provide software tailored to scientific endeavors. Need to store large amounts of data in a sparse matrix, solve a huge optimization problem or process the images from your space telescope? Maybe we can help!

How do I install these formulae?

Just brew tap homebrew/science and then brew install <formula>.

If the formula conflicts with one from another tap, you can brew install homebrew/science/<formula>.

You can also install via URL:

brew install https://raw.github.com/Homebrew/homebrew-science/master/<formula>.rb

Docs

brew help, man brew, or the Homebrew wiki.

Contributing

Please see the contributing guide.

Something went wrong with that request. Please try again.