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fixed relative path in app_controller.php; updated metarep_loader.pl

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1 parent d629d62 commit 8e47c3f3a93105d0e2265ad48cf74e7bd9807406 Johannes Goll committed Nov 14, 2012
Showing with 154 additions and 177 deletions.
  1. +0 −58 README~
  2. +2 −2 app/controllers/app_controller.php
  3. BIN db/metarep.mysql.db.gz
  4. +152 −117 scripts/perl/metarep_loader.pl
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58 README~
@@ -1,58 +0,0 @@
-METAREP DIRECTORIES
-/app web application files
-/cake cake framework files
-/data example datasets
-/scripts perl and R scripts
-/doc documentation
-/db relational databases
-/solr solr/lucene configuration files
-/vendors 3rd-party php tools
-
-ADDTIONAL INFORMATION
-Please visit the project's wiki page at http://wiki.github.com/jcvi/METAREP
-for additional information
-
-RELEASE NOTES
-JCVI Metagenomics Reports - Version 1.3.1
-
-New Feature:
-METAREP-391 update viral evidence summary for view page
-METAREP-409 update NCBI taxonomy, KEGG, GO, and enzymes:
-
-NCBI taxonomy version 09/30/2011: 280,602 new taxa KEGG version 09/01/2011: 21 new KEGG KO pathways; 1 new KEGG EC pathway Gene Ontology version 09/05/2011
-
-METAREP-407 implement GO slim support for compare page
-METAREP-406 implement mosaic plot option for compare page
-METAREP-205 sequence export option for search page
-
-Bug Fixes:
-METAREP-408 fix compare panel misalignment
-
-
-JCVI Metagenomics Reports - Version 1.2.0
-
-Improvement
-METAREP-244 - Increased speed of web page build-up
-METAREP-247 - Integrate new METAREP logo into web layout
-
-New Feature
-METAREP-228 - Added unresolved taxonomy fractions to Browse APIS pages
-METAREP-243 - Search datasets using name based searches for Taxonomy, HMM, Enzymes, GO and KEGG pathway names
-METAREP-245 - Added search option to filter Browse Taxonomy/GO/Pathway/EC pages
-METAREP-248 - Implemented PHP based load balancing option
-
-Bug
-METAREP-246 - Fix View Download Cache Issue
-
-
-JCVI Metagenomics Reports - Version 1.1.0
-
-New Feature
-METAREP-215 - Search all datasets option; generate meta-information summaries
-METAREP-217 - Allow users to test METAREP without creating an account
-METAREP-218 - Allow distance matrix export for hierarchical clustering, heatmap, mds plots
-METAREP-219 - Added color legend to heatmap
-METAREP-220 - Fixed search example links in search help dialog
-METAREP-221 - Use new radio buttons in compare page to limit selection to project datasets
-METAREP-223 - Compare datasets using Wilcoxon Rank Sum Test
-METAREP-224 - Ajax support for search dataset pages
@@ -22,7 +22,7 @@
* @license http://www.opensource.org/licenses/mit-license.php The MIT License
**/
-require_once('../config/constants.php');
+require_once(METAREP_WEB_ROOT.'/app/config/constants.php');
class AppController extends Controller {
@@ -281,4 +281,4 @@ function getmicrotime(){
return ((float)$usec + (float)$sec);
}
}
-?>
+?>
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