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removed kegg_taxon from sqlite (can be created using metarep_update_d…

…atabase.pl, updated README files
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1 parent 8bda37b commit eb4493bf1b05f09a3f31b4fbef8d3ccd11b5c36d Johannes Goll committed Nov 15, 2012
Showing with 16 additions and 6 deletions.
  1. +13 −2 README
  2. +3 −4 db/README
  3. BIN db/metarep.mysql.db.gz
  4. BIN db/metarep.sqlite3.db.gz
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15 README 100644 → 100755
@@ -8,9 +8,20 @@ METAREP DIRECTORIES
/solr solr/lucene configuration files
/vendors 3rd-party php tools
-ADDTIONAL INFORMATION
+INSTALLATION AND ADDTIONAL INFORMATION
Please visit the project's wiki page at http://wiki.github.com/jcvi/METAREP
-for additional information
+for additional information. The 1.3.2 installation guide can be found at
+https://github.com/jcvi/METAREP/wiki/Installation-Guide-v-1.3.2
+
+VIDEO DOCUMENTATION
+5 min overview
+http://www.youtube.com/watch?v=DJNjM7LMVWU
+
+web tutorial
+http://www.youtube.com/watch?v=7FPJaPyLjMk&feature=relmfu
+
+implementation details
+http://www.youtube.com/watch?v=j0rlTIkvfvI
RELEASE NOTES
JCVI Metagenomics Reports - Version 1.3.2 (bug fix release)
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7 db/README 100755 → 100644
@@ -8,10 +8,9 @@ KEGG 2011-09-01
GENE ONTOLOGY 2011-09-05
NCBI TAXONOMY 2011-09-30
+To update both databases, you can use the scripts/perl/metarep_update_database.pl
+script.
+
patch_enzymes.sql execute mysql import to insert missing high level enzyme categories
(version 1.3.0 and 1.3.1 before 2011-01-04.
mysql -u -p <db-name> < patch_enzymes.sql
-
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