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humann
jpmap
tab
xml
README

README

EXAMPLE DATA 

/data/tab 
/data/xml 

DeLong et al. Vertical Ocean Depth Profile datasets (7 libraries)
http://www.scienceonline.org/cgi/content/full/311/5760/496
JCVI's Prokaryotic Metagenomics Annotation Pipeline (JPMAP) was used to
annotate the reads

https://github.com/jcvi/JCVI_HMP_metagenomic_pipeline
http://standardsingenomics.org/index.php/sigen/article/view/sigs.651139


/data/humann 

NIH HMP Metabolic Reconstruction datasets (7 libraries)
HMP Unifed Metabolic Analysis Network (HUMAnN) pipeline was used to annotate
the reads

http://huttenhower.sph.harvard.edu/humann

See also
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0029044


/data/jpmap

NIH HMP Pretty-Good-Assembly datasets (2 libraries)
JCVI's Prokaryotic Metagenomics Annotation Pipeline (JPMAP) has been used to 
annotate the contigs

https://github.com/jcvi/JCVI_HMP_metagenomic_pipeline
http://standardsingenomics.org/index.php/sigen/article/view/sigs.651139

See also
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.002904