See the site to view the results.
Read the paper.
Download the raw FASTQ files at GEO record GSE77288.
See the contributing guidelines to add a new analysis.
analysis/contains the R Markdown files documenting the results
paper/contains the R Markdown files used to write the paper
code/contains command-line scripts
data/contains various summarized data files
tests/contains some sanity checks
The majority of the generated content, e.g. figures and HTML files, are in the
analysis/ subdirectory of the gh-pages branch.
Useful data files
- reads.txt - tab-delimited file contains read counts for the 19,027 Ensembl protein-coding genes with at least one observed read in at least one of the 864 single cell samples
- molecules.txt - same as
reads.txt, but for the molecule counts
- reads-filter.txt - tab-delimited file contains read counts for the 13,106 Ensembl protein-coding genes that passed our expression level filter for the 564 single cells that passed our quality control filters
- molecules-filter.txt - same as
reads-filter.txt, but for the molecule counts
- molecules-final.txt - tab-delimited file contains the final gene expression values after all of our processing steps