Skip to content
View jeanpaulrsoucy's full-sized avatar


  • Pro


Block or Report

Block or report jeanpaulrsoucy

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse

About me

Hello! My name is Jean-Paul R. Soucy and I am a PhD candidate in infectious disease epidemiology at the Dalla Lana School of Public Health at the University of Toronto. My research interests focus on the use of emerging data sources in infectious disease surveillance.

Connect with me on Twitter. Find my personal website at and my writing at Data Gripes. Code related to my blog can be found in the data-gripes repository.

My repositories

Table of contents

Software packages are highlighted with code text.

COVID-19 Canada Open Data Working Group

Click to expand
COVID-19 datasets
Other CCODWG projects
Click to expand

Python & R packages

Click to expand

In addition to the COVID-19 data automation pipeline described above, I have also created the following R and Python packages:

  • archivist: Python-based digital archive tool currently powering the Canadian COVID-19 Data Archive
  • getDDD: Download defined daily dose (DDD) information for selected ATC codes from the website of the WHO Collaborating Centre for Drug Statistics Methodology

Reproducible research

Click to expand

Wherever possible, I aim to publish reproducible research with open data:

Presentations & workshops

Click to expand


Click to expand
COVID-19 data


Find my GitHub gists here.


  1. ccodwg/CovidTimelineCanada ccodwg/CovidTimelineCanada Public

    A definitive dataset for COVID-19 in Canada

    R 24 7

  2. ccodwg/Covid19CanadaArchive ccodwg/Covid19CanadaArchive Public

    Canadian COVID-19 Data Archive

    Python 21 10

  3. ccodwg/Covid19CanadaBot ccodwg/Covid19CanadaBot Public

    GitHub Actions to support the COVID-19 Canada Open Data Working Group


  4. archivist archivist Public

    Python-based digital archive tool currently powering the Canadian COVID-19 Data Archive

    Python 2

  5. ccodwg/Covid19CanadaAPI ccodwg/Covid19CanadaAPI Public archive

    API for the COVID-19 Canada Open Data Working Group Dataset

    Python 3

  6. ccodwg/Covid19Canada ccodwg/Covid19Canada Public archive

    Epidemiological Data from the COVID-19 Epidemic in Canada

    R 326 141