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jeanpaulrsoucy/README.md

About me

Hello! My name is Jean-Paul R. Soucy and I am a PhD candidate in infectious disease epidemiology at the Dalla Lana School of Public Health at the University of Toronto. My research interests focus on the use of emerging data sources in infectious disease surveillance.

Connect with me on Twitter. Find my personal website at jprs.me and my writing at Data Gripes. Code related to my blog can be found in the data-gripes repository.

My repositories

Table of contents

Software packages are highlighted with code text.

COVID-19 Canada Open Data Working Group

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COVID-19 datasets
Other CCODWG projects
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Python & R packages

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In addition to the COVID-19 data automation pipeline described above, I have also created the following R and Python packages:

  • archivist: Python-based digital archive tool currently powering the Canadian COVID-19 Data Archive
  • getDDD: Download defined daily dose (DDD) information for selected ATC codes from the website of the WHO Collaborating Centre for Drug Statistics Methodology

Reproducible research

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Wherever possible, I aim to publish reproducible research with open data:

Presentations & workshops

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Miscellaneous

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COVID-19 data
Other

Gists

Find my GitHub gists here.

Pinned

  1. ccodwg/CovidTimelineCanada ccodwg/CovidTimelineCanada Public

    A definitive dataset for COVID-19 in Canada

    R 24 7

  2. ccodwg/Covid19CanadaArchive ccodwg/Covid19CanadaArchive Public

    Canadian COVID-19 Data Archive

    Python 21 10

  3. ccodwg/Covid19CanadaBot ccodwg/Covid19CanadaBot Public

    GitHub Actions to support the COVID-19 Canada Open Data Working Group

    Dockerfile

  4. archivist archivist Public

    Python-based digital archive tool currently powering the Canadian COVID-19 Data Archive

    Python 2

  5. ccodwg/Covid19CanadaAPI ccodwg/Covid19CanadaAPI Public archive

    API for the COVID-19 Canada Open Data Working Group Dataset

    Python 3

  6. ccodwg/Covid19Canada ccodwg/Covid19Canada Public archive

    Epidemiological Data from the COVID-19 Epidemic in Canada

    R 326 141