Datasets are collected here for differentially (up- and down-) expressed proteins identified in proteomic studies of cancer and in cell culture experiments. Tables of amino acid compositions of proteins are used for calculations of chemical composition, projected into selected basis species. Plotting functions are used to visualize the compositional differences and thermodynamic potentials for proteomic transformations.
The manual (help pages) and vignettes can be viewed at http://chnosz.net/canprot/html/00Index.html.
Installation from CRAN
Installation from Github
First install the devtools package from CRAN:
Then install canprot from Github:
To install the package including the vignettes:
devtools::install_github("jedick/canprot", build_vignettes = TRUE)
You may need to re-run this command one or more times. Note that this pulls in more R packages as dependencies, and pandoc is also required.