{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":281792508,"defaultBranch":"master","name":"gator","ownerLogin":"jeffkimbrel","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2020-07-22T22:06:49.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/10132972?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1595455615.0","currentOid":""},"activityList":{"items":[{"before":"7d2cf71089353e37203662bd1a2865892298c00e","after":"a220588b69a240526032afa4fd46cbf7e2436cdb","ref":"refs/heads/master","pushedAt":"2024-05-23T17:39:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffkimbrel","name":"Jeff Kimbrel","path":"/jeffkimbrel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10132972?s=80&v=4"},"commit":{"message":"run gator with a list of files from a file","shortMessageHtmlLink":"run gator with a list of files from a file"}},{"before":"5336310b6238784eee3e7395ca539494982cd0b6","after":"7d2cf71089353e37203662bd1a2865892298c00e","ref":"refs/heads/master","pushedAt":"2024-03-30T17:59:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffkimbrel","name":"Jeff Kimbrel","path":"/jeffkimbrel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10132972?s=80&v=4"},"commit":{"message":"db updates","shortMessageHtmlLink":"db updates"}},{"before":"0d8d5daffe9fa0550e3da241dfab9f5ad68883d3","after":"5336310b6238784eee3e7395ca539494982cd0b6","ref":"refs/heads/master","pushedAt":"2023-08-31T16:03:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffkimbrel","name":"Jeff Kimbrel","path":"/jeffkimbrel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10132972?s=80&v=4"},"commit":{"message":"Update gator_db.xlsx","shortMessageHtmlLink":"Update gator_db.xlsx"}},{"before":"4cd18b378a47e31c0b430eda11e002a70e2be212","after":"0d8d5daffe9fa0550e3da241dfab9f5ad68883d3","ref":"refs/heads/master","pushedAt":"2023-08-30T19:57:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffkimbrel","name":"Jeff Kimbrel","path":"/jeffkimbrel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10132972?s=80&v=4"},"commit":{"message":"v1.6.1\n\nAdded \"score as ratio\" mode to include KOFAMs that don't pass the threshold. Filter anything over 1 to keep as passed.","shortMessageHtmlLink":"v1.6.1"}},{"before":"e62f3c7a8c209fa37f204586e0624e3dc65b4f06","after":"4cd18b378a47e31c0b430eda11e002a70e2be212","ref":"refs/heads/master","pushedAt":"2023-08-29T22:39:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffkimbrel","name":"Jeff Kimbrel","path":"/jeffkimbrel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10132972?s=80&v=4"},"commit":{"message":"phospho updates","shortMessageHtmlLink":"phospho updates"}},{"before":"5633faa144207f58c1dff8f6da5ff3127f5b9d96","after":"e62f3c7a8c209fa37f204586e0624e3dc65b4f06","ref":"refs/heads/master","pushedAt":"2023-08-29T20:32:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffkimbrel","name":"Jeff Kimbrel","path":"/jeffkimbrel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10132972?s=80&v=4"},"commit":{"message":"Update gator_db.xlsx","shortMessageHtmlLink":"Update gator_db.xlsx"}},{"before":"6d172b1719feb5a2feffe14f33ea926848231824","after":"5633faa144207f58c1dff8f6da5ff3127f5b9d96","ref":"refs/heads/master","pushedAt":"2023-06-13T21:45:56.464Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffkimbrel","name":"Jeff Kimbrel","path":"/jeffkimbrel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10132972?s=80&v=4"},"commit":{"message":"v1.6.0\n\ndocker complete","shortMessageHtmlLink":"v1.6.0"}},{"before":"adee98a2dd5ea56704b25b2b3215f8258e3ec4db","after":"6d172b1719feb5a2feffe14f33ea926848231824","ref":"refs/heads/master","pushedAt":"2023-06-12T23:22:09.707Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffkimbrel","name":"Jeff Kimbrel","path":"/jeffkimbrel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10132972?s=80&v=4"},"commit":{"message":"v1.5.0\n\nbasic docker working for verify_db only","shortMessageHtmlLink":"v1.5.0"}},{"before":"78ea5ae1ca27c23cea616af49eea0571240dd644","after":"adee98a2dd5ea56704b25b2b3215f8258e3ec4db","ref":"refs/heads/master","pushedAt":"2023-06-07T03:39:19.143Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffkimbrel","name":"Jeff Kimbrel","path":"/jeffkimbrel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10132972?s=80&v=4"},"commit":{"message":"Delete pfams.hmm","shortMessageHtmlLink":"Delete pfams.hmm"}},{"before":"ed992404d5a046f094acf896e06db2cd94afa138","after":"78ea5ae1ca27c23cea616af49eea0571240dd644","ref":"refs/heads/master","pushedAt":"2023-06-06T21:58:06.259Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffkimbrel","name":"Jeff Kimbrel","path":"/jeffkimbrel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10132972?s=80&v=4"},"commit":{"message":"v1.4.0\n\nFixed some long standing issues\n- duplicate metadata summaries are no longer generated\n- rather than passing the metadata object to each thread, the metadata object is now pickled and loaded\n- multithreading updates\n    - count is now dynamic to be at a minimum the number of genomes, and at a max the number of available threads\n    - the above places nicely with the new --threads/-t option\n- run name added to text for run output, defaults to datetime\n- removed (well, commented out) EC annotation for now","shortMessageHtmlLink":"v1.4.0"}},{"before":"335e0ea81271940d27c8e5d26bc5d775f5bba8e6","after":"ed992404d5a046f094acf896e06db2cd94afa138","ref":"refs/heads/master","pushedAt":"2023-06-06T16:47:56.876Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffkimbrel","name":"Jeff Kimbrel","path":"/jeffkimbrel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10132972?s=80&v=4"},"commit":{"message":"v1.3.1","shortMessageHtmlLink":"v1.3.1"}},{"before":"756334aa96b75f5897540cb671821cec05b26bb1","after":"335e0ea81271940d27c8e5d26bc5d775f5bba8e6","ref":"refs/heads/master","pushedAt":"2023-05-01T02:32:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffkimbrel","name":"Jeff Kimbrel","path":"/jeffkimbrel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10132972?s=80&v=4"},"commit":{"message":"v1.3.0\n\nRemoved dependency on Manager\nRemoved dependence on python 3.9\nMade each genome now print to its own file","shortMessageHtmlLink":"v1.3.0"}},{"before":"038efef106c8ad3305a4259f681419e449d35bfa","after":"756334aa96b75f5897540cb671821cec05b26bb1","ref":"refs/heads/master","pushedAt":"2023-04-30T18:06:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffkimbrel","name":"Jeff Kimbrel","path":"/jeffkimbrel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10132972?s=80&v=4"},"commit":{"message":"20230430\n\nurea related genes","shortMessageHtmlLink":"20230430"}},{"before":"f274b0266da7891b7f9bf206963a8903f4d5cd2f","after":"038efef106c8ad3305a4259f681419e449d35bfa","ref":"refs/heads/master","pushedAt":"2023-04-21T17:03:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffkimbrel","name":"Jeff Kimbrel","path":"/jeffkimbrel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10132972?s=80&v=4"},"commit":{"message":"Update gator_db.xlsx","shortMessageHtmlLink":"Update gator_db.xlsx"}},{"before":"1795745a1c0fc04fd27309c19803bfa9afaf3093","after":"f274b0266da7891b7f9bf206963a8903f4d5cd2f","ref":"refs/heads/master","pushedAt":"2023-04-03T15:54:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffkimbrel","name":"Jeff Kimbrel","path":"/jeffkimbrel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10132972?s=80&v=4"},"commit":{"message":"Update gator_db.xlsx","shortMessageHtmlLink":"Update gator_db.xlsx"}}],"hasNextPage":false,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEUkxErAA","startCursor":null,"endCursor":null}},"title":"Activity · jeffkimbrel/gator"}