Jerome Kelleher jeromekelleher
- Wellcome Trust Centre for Human Genetics
- Joined on
- msprime 6 A reimplementation of Hudson's classical ms simulator for modern data sets.
- server 1 A reference implementation of the APIs defined in the schemas repository.
- ancestral-waves 0 Simulations of ancestral waves for the continuum, Wright-Fisher and Moran models.
- discsim 0 Efficient coalescent simulations in a spatial continuum
- ercs 0 Coalescent simulations in continuous space
Repositories contributed to
- ga4gh/server 40 A reference implementation of the APIs defined in the schemas repository.
- ga4gh/schemas 152 Work on data models and APIs for Genomic data.
- wormtable/wormtable 16 Write-once-read-many table for large datasets.
- ryanlayer/gqt 61 A genotype query interface.
- pysam-developers/pysam 95 Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
Contributions in the last year 930 total Aug 2, 2014 – Aug 2, 2015
Longest streak 12 days October 19 – October 30
Current streak 0 days Last contributed
- Pushed 7 commits to ga4gh/server Jul 29 – Jul 30
2 Pull Requests
- Open #371 Changed variantName back to name as in PR #239.
- Merged #517 Removed mandatory ez_setup usage.
10 Issues reported
- Open #532 Fix the callSetId semantics of getVariants for the current API version
- Open #531 Dataset ids should be set for VariantSets
- Open #526 API versioning and Content-Type
- Open #525 Add support for GET `/readgroups/id`
- Open #524 Add support for GET `/readgroupsets/id`
- Open #523 Add support for GET `/datasets/id`
- Open #522 Delete routes in frontend.py that are no longer used
- Open #372 Further cleanup of the master branch required?
- Open #521 Raise duplicate sample id problem with htslib
- Open #520 Add CallSets to simulator and enable test