post-clustering differential expression test
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truncated_normal
Figures.ipynb
README.md
experiments_pbmc3k.ipynb
experiments_synthetic_normal.ipynb
figure_utils.py
method.png
setup.cfg
setup.py
seurat_pbmc.ipynb

README.md

TN test

The code in this repository accompanies the experiments performed in the paper Towards a post-clustering test for differential expression by Zhang, Kamath, and Tse.

We provide the following notebooks:

We also provide two Python modules:

Installation

The TN test package can be installed via pip:

pip install truncated_normal

Import the package by adding the following line of code to your Python script:

from truncated_normal import truncated_normal as tn

For a tutorial on using the TN test module for your own projects, please refer to experiments_pbmc3k.ipynb and experiments_synthetic_normal.ipynb. We were able to install all required R and Python packages and run all of our experiments in this Docker image.

Method

method