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Gene tree root edge not following species tree #13

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arvestad opened this Issue · 3 comments

2 participants

@arvestad
Collaborator

I have found that the gene tree root is not follwing the species tree in the case that the gene tree does not have a leaf in the most basal species. Here is a simple test case:

S is:
(((a:0.1, b:0.1):0.1, (c:0.1, (d:0.05,e:0.05):0.05):0.1):0.1, f:0.3):0.1;

G is:
(agene, bgene);

and the GS map is:
agene a
bgene b

You can also see a bigger example at this link (if I remember to not delete the file....):
http://www.csc.kth.se/~arve/tmp/Bengts_gener/HBG285839_SbtAd.pdf

@jfnavarro
Owner

I cannot reproduce this error but I know where it happens and the fix is very simple, could you please sent the tree files when that happens?

@arvestad
Collaborator
@jfnavarro
Owner

I did not get the files in my email

@jfnavarro jfnavarro closed this
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