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jgraving committed Oct 10, 2019
1 parent 69cfe21 commit 48e45e49c93f7cc3332a5858beb6ef2346e7b044
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  1. +3 −3 README.md
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DeepPoseKit is designed to be extensible, so loading data in other formats is possible.
If you have annotated data from DeepLabCut (http://deeplabcut.org), try [our (experimental) example notebook ](https://github.com/jgraving/DeepPoseKit/blob/master/examples/deeplabcut_data_example.ipynb) for loading data in this format. <a href="https://colab.research.google.com/github/jgraving/deepposekit/blob/master/examples/deeplabcut_data_example.ipynb" target="_parent"><img src="https://colab.research.google.com/assets/colab-badge.svg" alt="Open In Colab"/></a>
Have data in another format? You can write your own custom generator to load it.
Check out the [example for writing custom data generators](https://github.com/jgraving/DeepPoseKit/blob/master/examples/custom_data_generator.ipynb). <a href="https://colab.research.google.com/github/jgraving/deepposekit/blob/master/examples/custom_data_generator.ipynb" target="_parent"><img src="https://colab.research.google.com/assets/colab-badge.svg" alt="Open In Colab"/></a>
If you have annotated data from DeepLabCut (http://deeplabcut.org), try [our (experimental) example notebook ](https://github.com/jgraving/DeepPoseKit/blob/master/examples/deeplabcut_data_example.ipynb) for loading data in this format. <a href="https://colab.research.google.com/github/jgraving/deepposekit/blob/master/examples/deeplabcut_data_example.ipynb" target="_parent"><img src="https://colab.research.google.com/assets/colab-badge.svg" alt="Open In Colab"/></a>
# Installation
DeepPoseKit requires [Tensorflow](https://github.com/tensorflow/tensorflow) for training and using pose estimation models. [Tensorflow](https://github.com/tensorflow/tensorflow) should be manually installed, along with dependencies such as CUDA and cuDNN, before installing DeepPoseKit:
@@ -158,7 +158,7 @@ You can also read [our open-access preprint](http://preprint.deepposekit.org):
If you use the [imgaug package](https://github.com/aleju/imgaug) for data augmentation, please also consider [citing it](https://github.com/aleju/imgaug/blob/master/README.md#citation).
If you're using data annotated with the DeepLabCut package (http://deeplabcut.org), be sure to [cite it](https://github.com/AlexEMG/DeepLabCut/blob/master/README.md#references).
If you [use data](https://github.com/jgraving/DeepPoseKit#i-already-have-annotated-data) that was annotated with the DeepLabCut package (http://deeplabcut.org) for your research, be sure to [cite it](https://github.com/AlexEMG/DeepLabCut/blob/master/README.md#references).
Please also consider citing the relevant references for the pose estimation model(s) used in your research, which can be found in the documentation (i.e., [`StackedDenseNet`](http://jakegraving.com/DeepPoseKit/html/deepposekit/models/StackedDenseNet.html#references), [`StackedHourglass`](http://jakegraving.com/DeepPoseKit/html/deepposekit/models/StackedHourglass.html#references), [`DeepLabCut`](http://jakegraving.com/DeepPoseKit/html/deepposekit/models/DeepLabCut.html#references), [`LEAP`](http://jakegraving.com/DeepPoseKit/html/deepposekit/models/LEAP.html#references)).

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