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# hmmscan :: search sequence(s) against a profile database
# HMMER 3.0 (March 2010); http://hmmer.org/
# Copyright (C) 2010 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: BA000019.orf9.fasta
# target HMM database: /data/biodata/HMMerDB/Pfam.hmm
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: BA000019.orf9 [L=873]
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.1e-38 132.2 7.8 7.1e-38 132.2 5.4 3.7 3 TonB_dep_Rec TonB dependent receptor
4.7e-33 114.1 1.3 4.7e-33 114.1 0.9 1.8 2 AMIN Localisation of periplasmic protein complexes
9.6e-18 65.5 2.2 9.6e-18 65.5 1.5 2.4 2 Plug TonB-dependent Receptor Plug Domain
0.0027 18.1 0.1 0.0027 18.1 0.1 2.2 2 Pfam-B_17828
------ inclusion threshold ------
0.054 13.8 1.6 1 9.6 0.0 2.8 4 DUF3308 Protein of unknown function (DUF3308)
0.36 9.9 1.1 0.62 9.2 0.2 1.8 3 DUF3374 Protein of unknown function (DUF3374)
Domain annotation for each model (and alignments):
>> TonB_dep_Rec TonB dependent receptor
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.8 0.0 0.035 1.9e+02 43 72 .. 391 420 .. 343 430 .. 0.77
2 ? 1.8 0.8 0.073 3.9e+02 82 186 .. 477 582 .. 436 618 .. 0.52
3 ! 132.2 5.4 1.3e-41 7.1e-38 1 277 [] 638 871 .. 638 871 .. 0.97
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