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Organizations

@qfo @etetoolkit @TreeViz

Pinned repositories

  1. etetoolkit/ete

    Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the …

    Python 307 107

  2. eggnog-mapper

    Fast genome-wide functional annotation through orthology assignment

    Python 73 28

  3. emapper-benchmark

    Raw data and scripts used to benchmark eggnog-mapper. Analysis and additional tests cases are provided as a python notebook.

    Jupyter Notebook 6 1

  4. etetoolkit/treematcher

    Search flexible patterns within tree structures using regular expression like syntax.

    Python 6 10

  5. test_branch_support_after_tree_rerooting

    Additional test cases of branch support rearrangements after tree re-rooting inspired by http://biorxiv.org/content/early/2015/12/25/035360 (APE, dendropy, biopython, ete3, newick-utilities, bioperl)

    R 1

43 contributions in the last year

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Contribution activity

November 2018

1 contribution in private repositories Nov 6

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