Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

introduce grin identifiers to facilitate in term mappings #18

Closed
jhpoelen opened this issue Jul 27, 2016 · 4 comments
Closed

introduce grin identifiers to facilitate in term mappings #18

jhpoelen opened this issue Jul 27, 2016 · 4 comments

Comments

@jhpoelen
Copy link
Collaborator

jhpoelen commented Jul 27, 2016

@cmungall suggested to introduce a grin id prefix in preparation for (non-trivial) terms mapping to TO / NCBITaxon etc.

Here's my suggestion for prefixes:

term prefix example url
GRIN taxon id GRINTaxon: GRINTaxon:300359 https://npgsweb.ars-grin.gov/gringlobal/taxonomydetail.aspx?id=300359
GRIN descriptor id GRINDesc: GRINDesc:68104 https://npgsweb.ars-grin.gov/gringlobal/descriptordetail.aspx?id=68104
GRIN method id GRINMethod: GRINMethod:391002 https://npgsweb.ars-grin.gov/gringlobal/method.aspx?id=391002
GRIN accession id GRINAccess: GRINAccess:1140225 https://npgsweb.ars-grin.gov/gringlobal/AccessionDetail.aspx?id=1140225

@AustinMeyer @cmungall curious to hear your thoughts.

@cmungall
Copy link
Member

Sounds good. We should use CURIEs for compatibility with the planteome
system

I suggest a prefix convention

GRINTaxon:
GRINDesc:

etc

On 27 Jul 2016, at 14:37, Jorrit Poelen wrote:

@cmungall suggested to introduce a grin id prefix in preparation for
(non-trivial) terms mapping to TO / NCBITaxon.

Here's my suggestion for prefixes:

term prefix example url
GRIN taxon id GRIN:Taxon GRIN:Taxon:300359

https://npgsweb.ars-grin.gov/gringlobal/taxonomydetail.aspx?id=300359
GRIN descriptor id | GRIN:Desc | GRIN:Desc:68104 |
https://npgsweb.ars-grin.gov/gringlobal/descriptordetail.aspx?id=68104
GRIN method id | GRIN:Method | GRIN:Method:391002 |
https://npgsweb.ars-grin.gov/gringlobal/method.aspx?id=391002
GRIN method id | GRIN:Access | GRIN:Access:1140225 |
https://npgsweb.ars-grin.gov/gringlobal/AccessionDetail.aspx?id=1140225

@AustinMeyer @cmungall curious to hear your thoughts.


You are receiving this because you were mentioned.
Reply to this email directly or view it on GitHub:
#18

@jhpoelen
Copy link
Collaborator Author

jhpoelen commented Jul 27, 2016

@cmungall updated example in issue text to reflect this.

@austinmeier any comments on the prefixes?

@austinmeier
Copy link
Collaborator

Looks good to me!

jhpoelen pushed a commit that referenced this issue Jul 27, 2016
@jhpoelen
Copy link
Collaborator Author

prefixes will now appear in grin scrape output tsv.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

3 participants