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Add example Design files.
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@jim-breck
jim-breck committed Oct 31, 2018
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2 changes: 2 additions & 0 deletions FB4_Design_Bluegill_1.csv
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NRun,Run_Name,Species_Num,Species_txt,Initial_W,fit.to,fit.to.value,First_day,Last_day,N_indiv,Oxycal,calc.pop_mort,calc.spawn,calc.nut,calc.contaminant,Init_pred_conc,contam_eq,T_File,Diet_File,Prey_E_File,Indigest_Prey_File,Pred_E_File,Mort_File,Reprod_File,Contam_Prey_C_File,Contam_assim_File,Contam_TE_File,Phos_Ae_File,Phos_Co_Pred_File,Phos_Co_Prey_File,Nit_Ae_File,Nit_Co_Pred_File,Nit_Co_Prey_File,FB4_Log_File
1,BLG 1,14,Bluegill sunfish (adult),10,Ration_prey,0.5,1,1,1,13560,FALSE,FALSE,FALSE,FALSE,NA,NA,Main Inputs/Temperature_30C.csv,Main Inputs/Diet_prop_inverts_only.csv,Main Inputs/Prey_E_2300inv_4500fish.csv,Main Inputs/Indigestible_Prey.csv,Main Inputs/Pred_E_4500.csv,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,FB4_Log_File_Bluegill_1.csv
9 changes: 9 additions & 0 deletions FB4_Design_Check_Trout.csv
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NRun,Run_Name,Species_Num,Species_txt,Initial_W,fit.to,fit.to.value,First_day,Last_day,N_indiv,Oxycal,calc.pop_mort,calc.spawn,calc.nut,calc.contaminant,Init_pred_conc,contam_eq,T_File,Diet_File,Prey_E_File,Indigest_Prey_File,Pred_E_File,Mort_File,Reprod_File,Contam_Prey_C_File,Contam_assim_File,Contam_TE_File,Phos_Ae_File,Phos_Co_Pred_File,Phos_Co_Prey_File,Nit_Ae_File,Nit_Co_Pred_File,Nit_Co_Prey_File,FB4_Log_File
1,Check Brook trout,15,Brook Trout (juvenile & adult),17.85,Weight,19.42,1,99,1,13560,FALSE,FALSE,FALSE,FALSE,NA,NA,Main Inputs/Temperature_Example_4.csv,Main Inputs/Diet_prop.csv,Main Inputs/Prey_E.csv,Main Inputs/Indigestible_Prey.csv,Main Inputs/Pred_E.csv,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,FB4_Log_File_Trout.csv
2,Check Brown trout,17,Brown Trout,17.85,Weight,19.42,1,99,1,13560,FALSE,FALSE,FALSE,FALSE,NA,NA,Main Inputs/Temperature_Example_4.csv,Main Inputs/Diet_prop.csv,Main Inputs/Prey_E.csv,Main Inputs/Indigestible_Prey.csv,Main Inputs/Pred_E.csv,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,FB4_Log_File_Trout.csv
3,Check Bull trout,18,Bull trout (adult) ,17.85,Weight,19.42,1,99,1,13560,FALSE,FALSE,FALSE,FALSE,NA,NA,Main Inputs/Temperature_Example_4.csv,Main Inputs/Diet_prop.csv,Main Inputs/Prey_E.csv,Main Inputs/Indigestible_Prey.csv,Main Inputs/Pred_E.csv,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,FB4_Log_File_Trout.csv
4,Check Cutthroat trout,23,Cutthroat trout,17.85,Weight,19.42,1,99,1,13560,FALSE,FALSE,FALSE,FALSE,NA,NA,Main Inputs/Temperature_Example_4.csv,Main Inputs/Diet_prop.csv,Main Inputs/Prey_E.csv,Main Inputs/Indigestible_Prey.csv,Main Inputs/Pred_E.csv,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,FB4_Log_File_Trout.csv
5,Check Lake trout,40,Lake trout (adult),17.85,Weight,19.42,1,99,1,13560,FALSE,FALSE,FALSE,FALSE,NA,NA,Main Inputs/Temperature_Example_4.csv,Main Inputs/Diet_prop.csv,Main Inputs/Prey_E.csv,Main Inputs/Indigestible_Prey.csv,Main Inputs/Pred_E.csv,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,FB4_Log_File_Trout.csv
5,Check Steelhead,78,Steelhead (adult),17.85,Weight,19.42,1,99,1,13560,FALSE,FALSE,FALSE,FALSE,NA,NA,Main Inputs/Temperature_Example_4.csv,Main Inputs/Diet_prop.csv,Main Inputs/Prey_E.csv,Main Inputs/Indigestible_Prey.csv,Main Inputs/Pred_E.csv,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,FB4_Log_File_Trout.csv
6,Check Rainbow juv,61,Rainbow Trout (juvenile) ,17.85,Weight,19.42,1,99,1,13560,FALSE,FALSE,FALSE,FALSE,NA,NA,Main Inputs/Temperature_Example_4.csv,Main Inputs/Diet_prop.csv,Main Inputs/Prey_E.csv,Main Inputs/Indigestible_Prey.csv,Main Inputs/Pred_E.csv,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,FB4_Log_File_Trout.csv
7,Check Rainbow adult,62,Rainbow Trout (adult) ,17.85,Weight,19.42,1,99,1,13560,FALSE,FALSE,FALSE,FALSE,NA,NA,Main Inputs/Temperature_Example_4.csv,Main Inputs/Diet_prop.csv,Main Inputs/Prey_E.csv,Main Inputs/Indigestible_Prey.csv,Main Inputs/Pred_E.csv,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,FB4_Log_File_Trout.csv
5 changes: 5 additions & 0 deletions FB4_Design_Example_1.csv
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NRun,Run_Name,Species_Num,Species_txt,Initial_W,fit.to,fit.to.value,First_day,Last_day,N_indiv,Oxycal,calc.pop_mort,calc.spawn,calc.nut,calc.contaminant,Init_pred_conc,contam_eq,T_File,Diet_File,Prey_E_File,Indigest_Prey_File,Pred_E_File,Mort_File,Reprod_File,Contam_Prey_C_File,Contam_assim_File,Contam_TE_File,Phos_Ae_File,Phos_Co_Pred_File,Phos_Co_Prey_File,Nit_Ae_File,Nit_Co_Pred_File,Nit_Co_Prey_File,FB4_Log_File
1,Example 1,101,Yellow perch (adult),65,Weight,122,1,365,1,13560,FALSE,FALSE,FALSE,FALSE,NA,NA,Main Inputs/Temperature.csv,Main Inputs/Diet_prop.csv,Main Inputs/Prey_E.csv,Main Inputs/Indigestible_Prey.csv,Main Inputs/Pred_E.csv,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,FB4_Log_File.csv
2,Example 1A,101,Yellow perch (adult),65,Weight,65,1,365,1,13560,FALSE,FALSE,FALSE,FALSE,NA,NA,Main Inputs/Temperature.csv,Main Inputs/Diet_prop.csv,Main Inputs/Prey_E.csv,Main Inputs/Indigestible_Prey.csv,Main Inputs/Pred_E.csv,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,FB4_Log_File.csv
3,Example 1B,101,Yellow perch (adult),65,Weight,65,1,365,1,13560,FALSE,FALSE,FALSE,FALSE,NA,NA,Main Inputs/Temperature.csv,Main Inputs/Diet_prop_inverts_only.csv,Main Inputs/Prey_E.csv,Main Inputs/Indigestible_Prey.csv,Main Inputs/Pred_E.csv,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,FB4_Log_File.csv
4,Example 1C,101,Yellow perch (adult),65,Weight,65,1,365,1,13560,FALSE,FALSE,FALSE,FALSE,NA,NA,Main Inputs/Temperature.csv,Main Inputs/Diet_prop_inverts_only.csv,Main Inputs/Prey_E_4500.csv,Main Inputs/Indigestible_Prey.csv,Main Inputs/Pred_E.csv,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,FB4_Log_File.csv
3 changes: 3 additions & 0 deletions FB4_Design_Example_5.csv
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NRun,Run_Name,Species_Num,Species_txt,Initial_W,fit.to,fit.to.value,First_day,Last_day,N_indiv,Oxycal,calc.pop_mort,calc.spawn,calc.nut,calc.contaminant,Init_pred_conc,contam_eq,T_File,Diet_File,Prey_E_File,Indigest_Prey_File,Pred_E_File,Mort_File,Reprod_File,Contam_Prey_C_File,Contam_assim_File,Contam_TE_File,Phos_Ae_File,Phos_Co_Pred_File,Phos_Co_Prey_File,Nit_Ae_File,Nit_Co_Pred_File,Nit_Co_Prey_File,FB4_Log_File
13,Example 5 (P excretion by juv),35,Gizzard shad,80,Weight,80,150,250,1,13560,FALSE,FALSE,TRUE,FALSE,NA,NA,Main Inputs/Temperature_Example_5.csv,Main Inputs/Diet_prop_Example_5.csv,Main Inputs/Prey_E_Example_5.csv,Main Inputs/Indigestible_Prey.csv,Main Inputs/Pred_E_4200.csv,NA,NA,NA,NA,NA,Sub-Models/Nutrient Regeneration/Phos_Ae_Example_5.csv,Sub-Models/Nutrient Regeneration/Phos_Conc_Pred_Example_5.csv,Sub-Models/Nutrient Regeneration/Phos_Conc_Prey_Example_5.csv,Sub-Models/Nutrient Regeneration/Nit_Ae_Example_5.csv,Sub-Models/Nutrient Regeneration/Nit_Conc_Pred_Example_5.csv,Sub-Models/Nutrient Regeneration/Nit_Conc_Prey_Example_5.csv,FB4_Log_File_Example_5.csv
14,Example 5 (P excretion by adult),35,Gizzard shad,300,Weight,300,150,250,1,13560,FALSE,FALSE,TRUE,FALSE,NA,NA,Main Inputs/Temperature_Example_5.csv,Main Inputs/Diet_prop_Example_5.csv,Main Inputs/Prey_E_Example_5.csv,Main Inputs/Indigestible_Prey.csv,Main Inputs/Pred_E_4200.csv,NA,NA,NA,NA,NA,Sub-Models/Nutrient Regeneration/Phos_Ae_Example_5.csv,Sub-Models/Nutrient Regeneration/Phos_Conc_Pred_Example_5.csv,Sub-Models/Nutrient Regeneration/Phos_Conc_Prey_Example_5.csv,Sub-Models/Nutrient Regeneration/Nit_Ae_Example_5.csv,Sub-Models/Nutrient Regeneration/Nit_Conc_Pred_Example_5.csv,Sub-Models/Nutrient Regeneration/Nit_Conc_Prey_Example_5.csv,FB4_Log_File_Example_5.csv
13 changes: 13 additions & 0 deletions FB4_Design_Examples_1-4.csv
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NRun,Run_Name,Species_Num,Species_txt,Initial_W,fit.to,fit.to.value,First_day,Last_day,N_indiv,Oxycal,calc.pop_mort,calc.spawn,calc.nut,calc.contaminant,Init_pred_conc,contam_eq,T_File,Diet_File,Prey_E_File,Indigest_Prey_File,Pred_E_File,Mort_File,Reprod_File,Contam_Prey_C_File,Contam_assim_File,Contam_TE_File,Phos_Ae_File,Phos_Co_Pred_File,Phos_Co_Prey_File,Nit_Ae_File,Nit_Co_Pred_File,Nit_Co_Prey_File,FB4_Log_File
1,Example 1,101,Yellow perch (adult),65,Weight,122,1,365,1,13560,FALSE,FALSE,FALSE,FALSE,NA,NA,Main Inputs/Temperature.csv,Main Inputs/Diet_prop.csv,Main Inputs/Prey_E.csv,Main Inputs/Indigestible_Prey.csv,Main Inputs/Pred_E.csv,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,FB4_Log_File_Examples_1-4.csv
2,Example 1A (65 to 65g),101,Yellow perch (adult),65,Weight,65,1,365,1,13560,FALSE,FALSE,FALSE,FALSE,NA,NA,Main Inputs/Temperature.csv,Main Inputs/Diet_prop.csv,Main Inputs/Prey_E.csv,Main Inputs/Indigestible_Prey.csv,Main Inputs/Pred_E.csv,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,FB4_Log_File_Examples_1-4.csv
3,Example 1B (no fish prey),101,Yellow perch (adult),65,Weight,65,1,365,1,13560,FALSE,FALSE,FALSE,FALSE,NA,NA,Main Inputs/Temperature.csv,Main Inputs/Diet_prop_inverts_only.csv,Main Inputs/Prey_E.csv,Main Inputs/Indigestible_Prey.csv,Main Inputs/Pred_E.csv,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,FB4_Log_File_Examples_1-4.csv
4,Example 1C (increase in Prey E),101,Yellow perch (adult),65,Weight,65,1,365,1,13560,FALSE,FALSE,FALSE,FALSE,NA,NA,Main Inputs/Temperature.csv,Main Inputs/Diet_prop_inverts_only.csv,Main Inputs/Prey_E_4500.csv,Main Inputs/Indigestible_Prey.csv,Main Inputs/Pred_E.csv,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,FB4_Log_File_Examples_1-4.csv
5,Example 2A (d1 - d120),101,Yellow perch (adult),150,Weight,150,1,120,1,13560,FALSE,FALSE,FALSE,FALSE,NA,NA,Main Inputs/Temperature.csv,Main Inputs/Diet_prop.csv,Main Inputs/Prey_E.csv,Main Inputs/Indigestible_Prey.csv,Main Inputs/Pred_E.csv,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,FB4_Log_File_Examples_1-4.csv
6,Example 2B (d121 - d240),101,Yellow perch (adult),150,Weight,150,121,240,1,13560,FALSE,FALSE,FALSE,FALSE,NA,NA,Main Inputs/Temperature.csv,Main Inputs/Diet_prop.csv,Main Inputs/Prey_E.csv,Main Inputs/Indigestible_Prey.csv,Main Inputs/Pred_E.csv,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,FB4_Log_File_Examples_1-4.csv
7,Example 2C (d241 - d360),101,Yellow perch (adult),150,Weight,150,241,360,1,13560,FALSE,FALSE,FALSE,FALSE,NA,NA,Main Inputs/Temperature.csv,Main Inputs/Diet_prop.csv,Main Inputs/Prey_E.csv,Main Inputs/Indigestible_Prey.csv,Main Inputs/Pred_E.csv,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,FB4_Log_File_Examples_1-4.csv
8,Example 3A (Baseline),42,Largemouth bass (adult),540,Weight,660,1,365,1,13560,FALSE,FALSE,FALSE,FALSE,NA,NA,Main Inputs/Temperature.csv,Main Inputs/Diet_prop.csv,Main Inputs/Prey_E.csv,Main Inputs/Indigestible_Prey.csv,Main Inputs/Pred_E.csv,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,FB4_Log_File_Examples_1-4.csv
9,Example 3B (T+2C; same p-value),42,Largemouth bass (adult),540,p-value,0.491553,1,365,1,13560,FALSE,FALSE,FALSE,FALSE,NA,NA,Main Inputs/Temperature_plus_2C.csv,Main Inputs/Diet_prop.csv,Main Inputs/Prey_E.csv,Main Inputs/Indigestible_Prey.csv,Main Inputs/Pred_E.csv,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,FB4_Log_File_Examples_1-4.csv
10,Example 3C (T+2C; same Cons),42,Largemouth bass (adult),540,Consumption,1713.917,1,365,1,13560,FALSE,FALSE,FALSE,FALSE,NA,NA,Main Inputs/Temperature_plus_2C.csv,Main Inputs/Diet_prop.csv,Main Inputs/Prey_E.csv,Main Inputs/Indigestible_Prey.csv,Main Inputs/Pred_E.csv,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,FB4_Log_File_Examples_1-4.csv
11,Example 3D (T+2C; 0.9*Cons),42,Largemouth bass (adult),540,Consumption,1542.525,1,365,1,13560,FALSE,FALSE,FALSE,FALSE,NA,NA,Main Inputs/Temperature_plus_2C.csv,Main Inputs/Diet_prop.csv,Main Inputs/Prey_E.csv,Main Inputs/Indigestible_Prey.csv,Main Inputs/Pred_E.csv,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,FB4_Log_File_Examples_1-4.csv
12,Example 4 (Pop Mortality 8%),40,Lake trout (adult),4536,Weight,4626,1,365,1223,13560,TRUE,FALSE,FALSE,FALSE,NA,NA,Main Inputs/Temperature.csv,Main Inputs/Diet_prop_fish_only.csv,Main Inputs/Prey_E.csv,Main Inputs/Indigestible_Prey.csv,Main Inputs/Pred_E.csv,Sub-Models/Mortality/Mortality.csv,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,FB4_Log_File_Examples_1-4.csv

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