R

This repository contains packages CGR which is not available from CRAN and kinship which has additional update. Links to packages I have maintained are as shown in the following table, with individual files listed by GitHub.

Packages	CRAN	GitHub	R package documentation
gap	https://cran.r-project.org/package=gap	https://github.com/cran/gap	https://rdrr.io/cran/gap/
gap.datasets	https://cran.r-project.org/package=gap.datasets	https://github.com/cran/gap.datasets	https://rdrr.io/cran/gap.datasets/
gap.examples
lmm	https://cran.r-project.org/package=lmm	https://github.com/cran/lmm	https://rdrr.io/cran/lmm/
pan	https://cran.r-project.org/package=pan	https://github.com/cran/pan	https://rdrr.io/cran/pan/
pQTLtools
tdthap	https://cran.r-project.org/package=tdthap	https://github.com/cran/tdthap	https://rdrr.io/cran/tdthap/
kinship1	https://cran.r-project.org/src/contrib/Archive/kinship/	https://github.com/cran/kinship

Packages gap and tdthap are featured in task view for genetics, while packages lmm and pan are featured in task view for social sciences.

You can install these packages either from CRAN, e.g.,

install.packages("pan", repos="https://cran.r-project.org")

or GitHub,

library(devtools)
install_github("jinghuazhao/R/gap", build_vignettes = TRUE)

I have implemented an earlier version of the g.binread function in GGIR package.

I have contributed to ITHIM injurymodel through a hackathon at MRC and recently to cambridge-ceu.

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¹ Windows package kinship_1.1.4.zip is built from kinship_1.1.4.tar.gz via https://win-builder.r-project.org/.