Sparse-Input Neural Network
Jean Feng and Noah Simon. "Sparse-Input Neural Networks for High-dimensional Nonparametric Regression and Classification." https://arxiv.org/abs/1711.07592
Note: For the latest iteration of this work, see Jean Feng and Noah Simon. "Ensembled sparse-input hierarchical networks for high-dimensional datasets." https://arxiv.org/abs/2005.04834
Install Tensorflow (python).
Code was run using python 3.4.3
read_data.py: make a dataset in the correct format
fit_spinn.py: main file for fitting SPINN!
fit_<other_methods>.py: fit using other methods
Simulations and data analyses
Each folder specifies the simulation or data analyses. Each folder is associated with its own plotting code via
plot_<folder_name>.py. To run the simulations/data analyses, use scons.
process_peptide_binding.py: Processes data downloaded from https://github.com/openvax/mhcflurry