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| from xml.etree import ElementTree | |
| from xml.dom.minidom import parseString | |
| import glob, json, re | |
| import os | |
| from huTools.structured import dict2xml, dict2et | |
| # the directory with e.g. alert.profile.json and a bazillion others in it | |
| PROFILE_DIR = os.environ.get('PROFILE_DIR') | |
| if PROFILE_DIR == None: | |
| PROFILE_DIR = "site" | |
| def tree(FILES): | |
| paths = {} | |
| def process(file): | |
| if file.endswith(".xml.profile.json"): return | |
| if file.endswith("iso-21090.profile.json"): return | |
| f = json.load(open(file)) | |
| if 'structure' not in f.keys(): return | |
| for v in f['structure'][0]['element']: | |
| #split a given property into multiple strands if it has multiple types like value[X] (dateTime|String) | |
| praw = v['path'] | |
| count = 0 | |
| if 'definition' in v and 'type' in v['definition']: types = v['definition']['type'] | |
| else: types = [None] | |
| for possibleValue in types: | |
| count += 1 | |
| v = possibleValue['code'] if possibleValue else None | |
| p = praw.replace("[x]", v or "" ) | |
| if v: | |
| v = re.sub("\(.*\)", "", v).replace("@", "").replace("*", "") | |
| if len(p.split(".")) == 1: v = p | |
| parent = ".".join(p.split(".")[:-1]) | |
| predicate = p.replace(".", ":", 1).replace(".","_") | |
| paths[p] = { | |
| 'fhir_path': p, | |
| 'type': v, | |
| 'subs': [] | |
| } | |
| if parent in paths: | |
| paths[parent]['subs'].append({ | |
| 'predicate': predicate, | |
| 'fhir_path': p, | |
| 'relative_xpath': "/".join(['f:'+x for x in p.replace(paths[parent]['fhir_path']+".", "").split(".")]), | |
| 'type': v | |
| }) | |
| for f in FILES: process(f) | |
| return {'fhirdefs': paths.values()} | |
| t = tree(glob.glob(PROFILE_DIR + "/*.profile.json")) | |
| #print json.dumps(t, sort_keys=True,indent=2) | |
| v = ElementTree.tostring(dict2et(t, None, listnames = {'fhirdefs': 'path', 'subs': 'sub'})) | |
| import pprint | |
| #pp = pprint.PrettyPrinter(indent=4) | |
| #pp.pprint(t) | |
| dom = parseString(v) | |
| print("\n".join(dom.toprettyxml().split("\n")[1:])).replace("<fhirdefs>", "<l:fhirdefs xmlns:l=\"http://local-mods\">").replace("</fhirdefs>", "</l:fhirdefs>") |