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step0-install.sh add header for bash script Aug 13, 2016
step1-download-SRA-data-and-change-to-fastq-files.sh add Chip-seq data analysis pipeline Aug 1, 2016
step2-QC-fastx-and-fastqc.sh add Chip-seq data analysis pipeline Aug 1, 2016
step3-alignment-to-reference-by-bowtie2.sh add RNAseq pipeline Aug 13, 2016
step4-peaks-calling-by-macs2-peakranger.sh add Chip-seq data analysis pipeline Aug 1, 2016
step5-peaks-view-alignment-bed.R add Chip-seq data analysis pipeline Aug 1, 2016
step5-peaks-view-bedGraph.R add Chip-seq data analysis pipeline Aug 1, 2016
step5-peaks-view-samtools-depth.R add Chip-seq data analysis pipeline Aug 1, 2016
step5-peaksView.sh.sh add RNAseq pipeline Aug 13, 2016
step6-CEAS.sh add RNAseq pipeline Aug 13, 2016
step6-ChIPpeakAnno-1.R add Chip-seq data analysis pipeline Aug 1, 2016
step6-ChIPpeakAnno-EnsDb.R add Chip-seq data analysis pipeline Aug 1, 2016
step6-ChIPpeakAnno-UCSCdb.R add Chip-seq data analysis pipeline Aug 1, 2016
step6-ChIPpeakAnno-Venn.R add RNAseq pipeline Aug 13, 2016
step6-ChIPpeakAnno-genomic-greatures.R add Chip-seq data analysis pipeline Aug 1, 2016
step6-ChIPseeker-1.R add RNAseq pipeline Aug 13, 2016
step6-bam-bed2bedGraph.sh add RNAseq pipeline Aug 13, 2016
step6-bam2wig.sh add Chip-seq data analysis pipeline Aug 1, 2016
step7-peaks-bed2fasta.sh add RNAseq pipeline Aug 13, 2016
step7-peaks2sequence.R add RNAseq pipeline Aug 13, 2016
step8-Homer-findMotif.sh add RNAseq pipeline Aug 13, 2016
step8-MIMEsuite-findMotif.sh add RNAseq pipeline Aug 13, 2016