This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Failed to load latest commit information.
System requirements: - A 64-bit CPU - The compilers gcc and a recent enough g++ with a support for the -std=c++11 flag How to compile: 1. Load submodules: git submodule init git submodule update 2. Compile dependencies: Run the command "make dependencies" in the project root and hope for the best. 3. Compile the main project: Run the command "make release" The final binary will be generated into the ./bin directory The program is used as follows: ./bin/BWT_cluster --input-reads reads.fna The program reads the configuration parameters from config.txt. The config.txt contains the path of the eventual output file, and parameters relating to the function the pipeline. To override the default parameters, you can give them as command line parameters like this: ./bin/BWT_cluster --input-reads reads.fna --preclustering-k 40 --threads 16 For a full list of available parameters see config.txt You can also give your own config file with the --config option: ./bin/BWT_cluster --input-reads reads.fna --config my_config.txt ---- For a clean stand-alone implementation of the BWT index used in this project, see github.com/jnalanko/BD_BWT_index
No releases published
No packages published