Code repository and raw data for Ebihara et al. 2019. "Growth Dynamics of the Independent Gametophytes of Pleurorosiopsis makinoi (Polypodiaceae)" Bulletin of the National Science Museum Series B (Botany) 45:77-86.
Reproducible analysis with Docker
make.R requires various packages to be installed, and may not work properly if package versions have changed. Therefore, a Docker image is provided to run the code reproducibly.
To use it, first install docker and clone this repository.
Navigate to the cloned repository (where
/path/to/repo is the path on your machine), and launch the container:
cd /path/to/repo docker-compose up -d
Enter the container:
docker exec -it pleurosoriopsis_analysis_1 bash
Inside the container, run
You will see the targets being built by
drake, and the final manuscript should be compiled at the end as
When it's finished, exit the container and take it down:
exit docker-compose down