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University of Duisburg-Essen
- Essen, Germany
- https://koesterlab.github.io
- @johanneskoester
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awesome-single-cell
awesome-single-cell PublicForked from seandavi/awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
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bioinformatics-workflows
bioinformatics-workflows PublicForked from GoekeLab/bioinformatics-workflows
minimal example implementations for bioinformatics workflow managers
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libmodallogic
libmodallogic PublicAutomatically exported from code.google.com/p/libmodallogic
Java 4
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dna-seq-gatk-variant-calling
dna-seq-gatk-variant-calling PublicForked from snakemake-workflows/dna-seq-gatk-variant-calling
This Snakemake pipeline implements the GATK best-practices workflow
HTML 4
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MultiQC
MultiQC PublicForked from ewels/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
Python 2
2,930 contributions in the last year
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Activity overview
Contribution activity
December 2023
Created 168 commits in 26 repositories
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- 1 repository not shown
Opened 3 pull requests in 2 repositories
snakemake/poetry-snakemake-plugin
1
open
1
merged
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fix: adapt to interface changes; add more metadata to templates
This contribution was made on Dec 8
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fix: adapt to interface changes
This contribution was made on Dec 5
snakemake/snakemake-storage-plugin-azure
1
merged
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perf: adapt to changes in snakemake-interface-storage-plugins 3.0
This contribution was made on Dec 5
Reviewed 11 pull requests in 7 repositories
snakemake/snakemake-wrappers
3 pull requests
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fix: Add json output to Nonpareil and extra plot options
This contribution was made on Dec 7
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fix: add support for multiple samples to bcftools mpileup
This contribution was made on Dec 7
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fix: issue 2295
This contribution was made on Dec 5
datavzrd/datavzrd
2 pull requests
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fix: Fix missing header offset for views with static paging
This contribution was made on Dec 8
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fix: Fix non-working precision keyword for case 0
This contribution was made on Dec 8
snakemake/snakemake
2 pull requests
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chore(deps): bump GoogleCloudPlatform/release-please-action from 3 to 4
This contribution was made on Dec 6
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docs: document name directive with example
This contribution was made on Dec 6
snakemake/snakemake-executor-plugin-googlebatch
1 pull request
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feat: add/googlebatch logging testing
This contribution was made on Dec 8
conda-forge/staged-recipes
1 pull request
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Add recipe for vl-convert
This contribution was made on Dec 7
snakemake/snakemake-executor-plugin-azure-batch
1 pull request
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fix: refactor to config from executor settings
This contribution was made on Dec 7
snakemake/snakemake-plugin-catalog
1 pull request
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Contributing: Added Plugin Resources
This contribution was made on Dec 7
Created an issue in snakemake/snakemake-executor-plugin-azure-batch that received 3 comments
Release?
HI @jakevc, shall we release? Does the true API workflow run for you? https://github.com/snakemake/snakemake-executor-plugin-azure-batch/actions/wo…