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  1. PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)

    Python 38 10

  2. Library of sketching functions used by PopPUNK

    C++ 18 3

  3. SEER, reimplemented in python 🐍🔮

    Python 46 16

  4. Methods to determine sequence element (unitig) presence/absence

    C++ 2 1

  5. Iterate multiple realisations of stochastic models

    C++ 11

  6. 🧹 Monte-Carlo State Space Models

    R 13 1

1,808 contributions in the last year

May Jun Jul Aug Sep Oct Nov Dec Jan Feb Mar Apr May Mon Wed Fri
Activity overview
Contributed to johnlees/PopPUNK, mrc-ide/dust, johnlees/pp-sketchlib and 5 other repositories

Contribution activity

May 2021

Opened 1 other pull request in 1 repository
1 merged
Reviewed 7 pull requests in 5 repositories
mrc-ide/odin.dust 2 pull requests
mrc-ide/sircovid 2 pull requests
johnlees/PopPUNK 1 pull request
conda-forge/pp-sketchlib-feedstock 1 pull request
mrc-ide/dust 1 pull request

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