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README.md

gnu-bwt-aligner

Burrows-Wheeler Transform libraries for short read inexact alignment released under the LGPL v3 license.

Developed at "Instituto de instrumentación de la imagen molecular" (I3M) of "Universitat Politècnica de València" (UPV) Valencia, Spain:

http://www.i3m.upv.es/view.php/GRYCAP/Principal?lang=EN

in collaboration with "Centro de Investigación Príncipe Felipe" Valencia Spain:

http://www.cipf.es/

and the support of Bull Inc.

An early publication on the implementation of this project in GPU exists, please refer to:

http://dx.doi.org/10.1109/TCBB.2012.49

Contact:

http://www.grycap.upv.es/view.php/GRyCAP/Organizacion/jsalavert

===============

The code from CSALIB library included in this project is provided by "National Institute of Informatics" Tokyo, Japan under the MIT license:

https://code.google.com/p/csalib/

Contact:

http://researchmap.jp/sada/english/