identify BLAST hits between two datasets by employing a third intermediate dataset
Perl
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scripts
LICENSE
MANIFEST
Makefile.PL
README.md
leapfrog

README.md

leapfrog

DESCRIPTION

identify BLAST hits between two datasets by employing a third intermediate dataset. These hits are designated as hidden orthologs. The scripts directory includes scripts used in the analysis of these hidden orthologs.

AVAILABILITY

https://github.com/josephryan/leapfrog (click the "Download ZIP" button at the bottom of the right column).

DEPENDENCIES

General system tools:

INSTALLATION

To install leapfrog and documentation, type the following:

perl Makefile.PL
make
sudo make install

If you do not have permission to install to the system see the following:

http://www.perlmonks.org/index.pl?node_id=128077#permission

RUN

leapfrog [--eval=EVALUECUTOFF] [--help] [--version] --1v2=TABBLAST --2v1=TABBLAST --1v3=TABBLAST --2v3=TABBLAST --3v2=TABBLAST

DOCUMENTATION

Documentation is embedded inside of leapfrog in POD format and can be viewed by running any of the following:

    leapfrog --help
    perldoc leapfrog
    man leapfrog  # available after installation

COPYRIGHT AND LICENSE

Copyright (C) 2015 Joseph F. Ryan

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program in the file LICENSE. If not, see http://www.gnu.org/licenses/.