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Popular repositories Loading

  1. smc-macros smc-macros Public

    Complete suite of ImageJ/Fiji macros written by Sean McKinney for performing various image processing tasks at the Stowers Institute.

    ImageJ Macro 2

  2. SpatialTranscriptomics SpatialTranscriptomics Public

    Code for troubleshooting, analyzing and displaying SlideSeq data

    Jupyter Notebook 1

  3. smc-plugins smc-plugins Public

    Java code for Sean McKinney's ImageJ plugins from the Stowers Institute.

    Java

  4. Tensorflow Tensorflow Public

    Older code for Unets, auto-encoders, convonets in Tensorflow. Includes original code for processing RNA Fish spots and segmenting EM Nucleii.

    Jupyter Notebook

  5. pub-2020elife pub-2020elife Public

    Fiji macros associated with processing data from Chen et al., eLife 2020.

    1

  6. 2021_Doddihal 2021_Doddihal Public

    Fiji processing macros associated with Doddihal et al.

    ImageJ Macro