Importing my 1.01 theme into the themeroller left the swatch fields as the default rather than updating to that provided in my imported theme.
Moved from jquery mobile repo Issue #4057 - jquery/jquery-mobile#4057
Update - Expanded issue from just affecting the Link Color to affecting all field values on the imported swatch.
This seems to include all fields in the Swatch, although the swatch representation appears correct the field values aren't updated making changes difficult.
Note - If I then export and re-upload the theme these fields are corrected, so it appears it's only on initial upload of a v1.0.1 theme.
Also minor note, exporting the second time didn't update the theme header to v1.1 left as v1.0.1;