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[ENH] Add DataFrame method to explode a list-like column (GH pandas-d…
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…ev#16538)

Sometimes a values column is presented with list-like values on one row.
Instead we may want to split each individual value onto its own row,
keeping the same mapping to the other key columns. While it's possible
to chain together existing pandas operations (in fact that's exactly
what this implementation is) to do this, the sequence of operations
is not obvious. By contrast this is available as a built-in operation
in say Spark and is a fairly common use case.
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changhiskhan authored and jreback committed Jul 8, 2019
1 parent acccdcc commit 9cab676
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18 changes: 18 additions & 0 deletions asv_bench/benchmarks/reshape.py
Expand Up @@ -240,4 +240,22 @@ def time_qcut_datetime(self, bins):
pd.qcut(self.datetime_series, bins)


class Explode(object):
param_names = ['n_rows', 'max_list_length']
params = [[100, 1000, 10000], [3, 5, 10]]

def setup(self, n_rows, max_list_length):
import string
num_letters = np.random.randint(0, max_list_length, n_rows)
key_column = [','.join([np.random.choice(list(string.ascii_letters))
for _ in range(k)])
for k in num_letters]
value_column = np.random.randn(n_rows)
self.frame = pd.DataFrame({'key': key_column,
'value': value_column})

def time_explode(self, n_rows, max_list_length):
self.frame.explode('key', sep=',')


from .pandas_vb_common import setup # noqa: F401
31 changes: 31 additions & 0 deletions doc/source/user_guide/reshaping.rst
Expand Up @@ -801,3 +801,34 @@ Note to subdivide over multiple columns we can pass in a list to the
df.pivot_table(
values=['val0'], index='row', columns=['item', 'col'], aggfunc=['mean'])
.. _reshaping.explode:

Exploding a List-like Column
----------------------------

Sometimes the value column is list-like:

.. ipython:: python
keys = ['panda1', 'panda2', 'panda3']
values = [['eats', 'shoots'], ['shoots', 'leaves'], ['eats', 'leaves']]
df = pd.DataFrame({'keys': keys, 'values': values})
df
But we actually want to put each value onto its own row.
For this purpose we can use ``DataFrame.explode``:

.. ipython:: python
df.explode('values')
For convenience, we can use the optional keyword ``sep`` to automatically
split a string column before exploding:

.. ipython:: python
values = ['eats,shoots', 'shoots,leaves', 'eats,shoots,leaves']
df2 = pd.DataFrame({'keys': keys, 'values': values})
df2
df2.explode('values', sep=',')
30 changes: 30 additions & 0 deletions doc/source/whatsnew/v0.24.0.rst
Expand Up @@ -15,7 +15,37 @@ This is a major release from 0.23.4 and includes a number of API changes, new
features, enhancements, and performance improvements along with a large number
of bug fixes.

<<<<<<< HEAD
Highlights include:
=======
These are the changes in pandas 0.24.0. See :ref:`release` for a full changelog
including other versions of pandas.

.. _whatsnew_0240.enhancements:

New features
~~~~~~~~~~~~
- :func:`merge` now directly allows merge between objects of type ``DataFrame`` and named ``Series``, without the need to convert the ``Series`` object into a ``DataFrame`` beforehand (:issue:`21220`)
- ``ExcelWriter`` now accepts ``mode`` as a keyword argument, enabling append to existing workbooks when using the ``openpyxl`` engine (:issue:`3441`)
- ``FrozenList`` has gained the ``.union()`` and ``.difference()`` methods. This functionality greatly simplifies groupby's that rely on explicitly excluding certain columns. See :ref:`Splitting an object into groups <groupby.split>` for more information (:issue:`15475`, :issue:`15506`).
- :func:`DataFrame.to_parquet` now accepts ``index`` as an argument, allowing
the user to override the engine's default behavior to include or omit the
dataframe's indexes from the resulting Parquet file. (:issue:`20768`)
- :meth:`DataFrame.corr` and :meth:`Series.corr` now accept a callable for generic calculation methods of correlation, e.g. histogram intersection (:issue:`22684`)
- :func:`DataFrame.to_string` now accepts ``decimal`` as an argument, allowing the user to specify which decimal separator should be used in the output. (:issue:`23614`)
- :func:`read_feather` now accepts ``columns`` as an argument, allowing the user to specify which columns should be read. (:issue:`24025`)
- :func:`DataFrame.to_html` now accepts ``render_links`` as an argument, allowing the user to generate HTML with links to any URLs that appear in the DataFrame.
See the :ref:`section on writing HTML <io.html>` in the IO docs for example usage. (:issue:`2679`)
- :func:`DataFrame.explode` to split list-like values onto individual rows. See :ref:`section on Exploding list-like column <reshaping.html>` in docs for more information (:issue:`16538`)

.. _whatsnew_0240.values_api:

Accessing the values in a Series or Index
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

:attr:`Series.array` and :attr:`Index.array` have been added for extracting the array backing a
``Series`` or ``Index``. (:issue:`19954`, :issue:`23623`)
>>>>>>> 2138ef063... [ENH] Add DataFrame method to explode a list-like column (GH #16538)

* :ref:`Optional Integer NA Support <whatsnew_0240.enhancements.intna>`
* :ref:`New APIs for accessing the array backing a Series or Index <whatsnew_0240.values_api>`
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51 changes: 51 additions & 0 deletions pandas/core/frame.py
Expand Up @@ -6436,6 +6436,57 @@ def melt(
col_level=col_level,
)

def explode(self, col_name, sep=None, dtype=None):
"""
Create new DataFrame expanding a list-like column.
.. versionadded:: 0.24.0
Parameters
----------
col_name : str
Name of the column to be exploded.
sep : str, default None
Convenience to split a string `col_name` before exploding.
dtype : str or dtype, default None
Optionally coerce the dtype of exploded column.
Returns
-------
exploded: DataFrame
See Also
--------
Series.str.split: Split string values on specified separator.
Series.str.extract: Extract groups from the first regex match.
Examples
--------
>>> df = pd.DataFrame({'k': ['a,b', 'c,d'], 'v': [0, 1]})
>>> df.explode('k', sep=',')
k v
0 a 0
0 b 0
1 c 1
1 d 1
"""
col = self[col_name]
if len(self) == 0:
return self.copy()
if sep:
col_expanded = col.str.split(sep, expand=True)
else:
col_expanded = col.apply(Series)
col_stacked = (col_expanded
.stack()
.reset_index(level=-1, drop=True)
.rename(col_name))
if dtype:
col_stacked = col_stacked.astype(dtype)
return (col_stacked.to_frame()
.join(self.drop(col_name, axis=1))
.reindex(self.columns, axis=1))

# ----------------------------------------------------------------------
# Time series-related

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95 changes: 95 additions & 0 deletions pandas/tests/frame/test_reshape.py
Expand Up @@ -1043,6 +1043,101 @@ def test_unstack_swaplevel_sortlevel(self, level):
tm.assert_frame_equal(result, expected)


class TestDataFrameExplode(object):
# GH 16538
columns = ['a', 'b', 'c']

def test_sep(self):
# Automatically do str.split
df = pd.DataFrame([['foo,bar', 'x', 42],
['fizz,buzz', 'y', 43]],
columns=self.columns)
rs = df.explode('a', sep=',')
xp = pd.DataFrame({'a': ['foo', 'bar', 'fizz', 'buzz'],
'b': ['x', 'x', 'y', 'y'],
'c': [42, 42, 43, 43]},
index=[0, 0, 1, 1])
tm.assert_frame_equal(rs, xp)

def test_dtype(self):
# Coerce dtype
df = pd.DataFrame([[[0, 1, 4], 'x', 42],
[[2, 3], 'y', 43]],
columns=self.columns)
rs = df.explode('a', dtype='int')
xp = pd.DataFrame({'a': np.array([0, 1, 4, 2, 3], dtype='int'),
'b': ['x', 'x', 'x', 'y', 'y'],
'c': [42, 42, 42, 43, 43]},
index=[0, 0, 0, 1, 1])
tm.assert_frame_equal(rs, xp)

def test_na(self):
# NaN's and empty lists are omitted
# TODO: option to preserve explicit NAs instead
df = pd.DataFrame([[[], 'x', 42],
[[2.0, np.nan], 'y', 43]],
columns=self.columns)
rs = df.explode('a')
xp = pd.DataFrame({'a': [2.0],
'b': ['y'],
'c': [43]},
index=[1])
tm.assert_frame_equal(rs, xp)

def test_nonuniform_type(self):
# Not everything is a list
df = pd.DataFrame([[[0, 1, 4], 'x', 42],
[3, 'y', 43]],
columns=self.columns)
rs = df.explode('a', dtype='int')
xp = pd.DataFrame({'a': np.array([0, 1, 4, 3], dtype='int'),
'b': ['x', 'x', 'x', 'y'],
'c': [42, 42, 42, 43]},
index=[0, 0, 0, 1])
tm.assert_frame_equal(rs, xp)

def test_all_scalars(self):
# Nothing is a list
df = pd.DataFrame([[0, 'x', 42],
[3, 'y', 43]],
columns=self.columns)
rs = df.explode('a')
xp = pd.DataFrame({'a': [0, 3],
'b': ['x', 'y'],
'c': [42, 43]},
index=[0, 1])
tm.assert_frame_equal(rs, xp)

def test_empty(self):
# Empty frame
rs = pd.DataFrame(columns=['a', 'b']).explode('a')
xp = pd.DataFrame(columns=['a', 'b'])
tm.assert_frame_equal(rs, xp)

def test_missing_column(self):
# Bad column name
df = pd.DataFrame([[0, 'x', 42],
[3, 'y', 43]],
columns=self.columns)
pytest.raises(KeyError, df.explode, 'badcolumnname')

def test_multi_index(self):
# Multi-index
idx = pd.MultiIndex.from_tuples([(0, 'a'), (1, 'b')])
df = pd.DataFrame([['foo,bar', 'x', 42],
['fizz,buzz', 'y', 43]],
columns=self.columns,
index=idx)
rs = df.explode('a', sep=',')
idx = pd.MultiIndex.from_tuples(
[(0, 'a'), (0, 'a'), (1, 'b'), (1, 'b')])
xp = pd.DataFrame({'a': ['foo', 'bar', 'fizz', 'buzz'],
'b': ['x', 'x', 'y', 'y'],
'c': [42, 42, 43, 43]},
index=idx)
tm.assert_frame_equal(rs, xp)


def test_unstack_fill_frame_object():
# GH12815 Test unstacking with object.
data = pd.Series(["a", "b", "c", "a"], dtype="object")
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