From 70158432aa7924e7a48e439b5809af3f257d3339 Mon Sep 17 00:00:00 2001
From: Joseph Madamesila <jmadamesila@gmail.com>
Date: Mon, 4 May 2020 14:54:21 -0600
Subject: [PATCH 1/3] Fixed old mtf method name from "relative_resolution_to",
 to new name "relative_resolution"

---
 pylinac/ct.py | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/pylinac/ct.py b/pylinac/ct.py
index fef7a61c..f0248c85 100644
--- a/pylinac/ct.py
+++ b/pylinac/ct.py
@@ -1038,7 +1038,7 @@ def _results(self):
         print(f"Origin slice: {self.find_origin_slice()}")
         mtfs = {}
         for mtf in (95, 90, 80, 50, 30):
-            mtfval = self.ctp528.mtf.relative_resolution_at(mtf)
+            mtfval = self.ctp528.mtf.relative_resolution(mtf)
             mtfs[mtf] = mtfval
         print(f'MTFs: {mtfs}')
 
@@ -1179,9 +1179,9 @@ def publish_pdf(self, filename: str, notes: str=None, open_file: bool=False, met
         module_images = [('hu', 'lin')]
         if CTP528 in self.modules:
             add = [' - CTP528 Results - ',
-             f'MTF 80% (lp/mm): {self.ctp528.mtf.relative_resolution_at(80):2.2f}',
-             f'MTF 50% (lp/mm): {self.ctp528.mtf.relative_resolution_at(50):2.2f}',
-             f'MTF 30% (lp/mm): {self.ctp528.mtf.relative_resolution_at(30):2.2f}',
+             f'MTF 80% (lp/mm): {self.ctp528.mtf.relative_resolution(80):2.2f}',
+             f'MTF 50% (lp/mm): {self.ctp528.mtf.relative_resolution(50):2.2f}',
+             f'MTF 30% (lp/mm): {self.ctp528.mtf.relative_resolution(30):2.2f}',
             ]
             module_texts.append(add)
             module_images.append(('sp', 'mtf'))
@@ -1291,7 +1291,7 @@ def results(self):
                   f'Uniformity Passed?: {self.ctp486.overall_passed}\n')
             string += add
         if CTP528 in self.modules:
-            add = (f'MTF 50% (lp/mm): {self.ctp528.mtf.relative_resolution_at(50):2.2f}\n')
+            add = (f'MTF 50% (lp/mm): {self.ctp528.mtf.relative_resolution(50):2.2f}\n')
             string += add
         if CTP515 in self.modules:
             add = (f'Low contrast ROIs "seen": {self.ctp515.rois_visible}\n')

From be21ec33dff312129d53f1b81d09cea6261d385d Mon Sep 17 00:00:00 2001
From: Joseph Madamesila <jmadamesila@gmail.com>
Date: Mon, 4 May 2020 15:00:54 -0600
Subject: [PATCH 2/3] Fixed old mtf method name from "relative_resolution_to",
 to new name "relative_resolution"

---
 .idea/workspace.xml | 224 ++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 224 insertions(+)
 create mode 100644 .idea/workspace.xml

diff --git a/.idea/workspace.xml b/.idea/workspace.xml
new file mode 100644
index 00000000..e1dd7088
--- /dev/null
+++ b/.idea/workspace.xml
@@ -0,0 +1,224 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="BranchesTreeState">
+    <expand>
+      <path>
+        <item name="ROOT" type="e8cecc67:BranchNodeDescriptor" />
+        <item name="LOCAL_ROOT" type="e8cecc67:BranchNodeDescriptor" />
+      </path>
+      <path>
+        <item name="ROOT" type="e8cecc67:BranchNodeDescriptor" />
+        <item name="REMOTE_ROOT" type="e8cecc67:BranchNodeDescriptor" />
+      </path>
+      <path>
+        <item name="ROOT" type="e8cecc67:BranchNodeDescriptor" />
+        <item name="REMOTE_ROOT" type="e8cecc67:BranchNodeDescriptor" />
+        <item name="GROUP_NODE:origin" type="e8cecc67:BranchNodeDescriptor" />
+      </path>
+    </expand>
+    <select>
+      <path>
+        <item name="ROOT" type="e8cecc67:BranchNodeDescriptor" />
+        <item name="LOCAL_ROOT" type="e8cecc67:BranchNodeDescriptor" />
+        <item name="BRANCH:catphan_mtf_bug" type="e8cecc67:BranchNodeDescriptor" />
+      </path>
+    </select>
+  </component>
+  <component name="ChangeListManager">
+    <list default="true" id="dcdfe904-d4e5-443d-a106-b24ec160934f" name="Default Changelist" comment="Delete test files. Accidentally uploaded">
+      <change beforePath="$PROJECT_DIR$/pylinac/ct.py" beforeDir="false" afterPath="$PROJECT_DIR$/pylinac/ct.py" afterDir="false" />
+    </list>
+    <list id="3d09c6ea-c924-43ef-a73e-3ce150fde602" name="Revert &quot;Initial configuration&quot;" comment="Revert &quot;Initial configuration&quot;&#10;&#10;This reverts commit eb089b1d" />
+    <option name="SHOW_DIALOG" value="false" />
+    <option name="HIGHLIGHT_CONFLICTS" value="true" />
+    <option name="HIGHLIGHT_NON_ACTIVE_CHANGELIST" value="false" />
+    <option name="LAST_RESOLUTION" value="IGNORE" />
+  </component>
+  <component name="Git.Settings">
+    <option name="RECENT_BRANCH_BY_REPOSITORY">
+      <map>
+        <entry key="$PROJECT_DIR$" value="master" />
+      </map>
+    </option>
+    <option name="RECENT_GIT_ROOT_PATH" value="$PROJECT_DIR$" />
+    <option name="RESET_MODE" value="HARD" />
+  </component>
+  <component name="ProjectId" id="1bSJa3livUQru48ShVSYVlaewjN" />
+  <component name="ProjectLevelVcsManager">
+    <ConfirmationsSetting value="2" id="Add" />
+  </component>
+  <component name="ProjectViewState">
+    <option name="hideEmptyMiddlePackages" value="true" />
+    <option name="showLibraryContents" value="true" />
+  </component>
+  <component name="PropertiesComponent">
+    <property name="ASKED_ADD_EXTERNAL_FILES" value="true" />
+    <property name="RunOnceActivity.OpenProjectViewOnStart" value="true" />
+    <property name="RunOnceActivity.ShowReadmeOnStart" value="true" />
+    <property name="SHARE_PROJECT_CONFIGURATION_FILES" value="true" />
+    <property name="TODO_SCOPE" value="All Places" />
+    <property name="WebServerToolWindowFactoryState" value="false" />
+    <property name="last_opened_file_path" value="$PROJECT_DIR$/pylinac/ct.py" />
+    <property name="node.js.detected.package.eslint" value="true" />
+    <property name="node.js.detected.package.tslint" value="true" />
+    <property name="node.js.path.for.package.eslint" value="project" />
+    <property name="node.js.path.for.package.tslint" value="project" />
+    <property name="node.js.selected.package.eslint" value="(autodetect)" />
+    <property name="node.js.selected.package.tslint" value="(autodetect)" />
+    <property name="settings.editor.selected.configurable" value="com.jetbrains.python.configuration.PyActiveSdkModuleConfigurable" />
+    <property name="two.files.diff.last.used.file" value="$PROJECT_DIR$/pylinac/ct.py" />
+  </component>
+  <component name="PyConsoleOptionsProvider">
+    <option name="myPythonConsoleState">
+      <console-settings>
+        <option name="useSoftWraps" value="true" />
+      </console-settings>
+    </option>
+  </component>
+  <component name="RunManager">
+    <configuration default="true" type="PythonConfigurationType" factoryName="Python">
+      <module name="TBCCpylinac" />
+      <option name="INTERPRETER_OPTIONS" value="" />
+      <option name="PARENT_ENVS" value="true" />
+      <envs>
+        <env name="PYTHONUNBUFFERED" value="1" />
+      </envs>
+      <option name="SDK_HOME" value="" />
+      <option name="WORKING_DIRECTORY" value="" />
+      <option name="IS_MODULE_SDK" value="false" />
+      <option name="ADD_CONTENT_ROOTS" value="true" />
+      <option name="ADD_SOURCE_ROOTS" value="true" />
+      <EXTENSION ID="PythonCoverageRunConfigurationExtension" runner="coverage.py" />
+      <option name="SCRIPT_NAME" value="" />
+      <option name="PARAMETERS" value="" />
+      <option name="SHOW_COMMAND_LINE" value="true" />
+      <option name="EMULATE_TERMINAL" value="false" />
+      <option name="MODULE_MODE" value="false" />
+      <option name="REDIRECT_INPUT" value="false" />
+      <option name="INPUT_FILE" value="" />
+      <method v="2" />
+    </configuration>
+  </component>
+  <component name="SvnConfiguration">
+    <configuration />
+  </component>
+  <component name="TaskManager">
+    <task active="true" id="Default" summary="Default task">
+      <changelist id="dcdfe904-d4e5-443d-a106-b24ec160934f" name="Default Changelist" comment="" />
+      <created>1588619621288</created>
+      <option name="number" value="Default" />
+      <option name="presentableId" value="Default" />
+      <updated>1588619621288</updated>
+      <workItem from="1588619624693" duration="4531000" />
+      <workItem from="1588624672387" duration="130000" />
+      <workItem from="1588624828433" duration="644000" />
+    </task>
+    <task id="LOCAL-00001" summary="Initial configuration">
+      <created>1588622923112</created>
+      <option name="number" value="00001" />
+      <option name="presentableId" value="LOCAL-00001" />
+      <option name="project" value="LOCAL" />
+      <updated>1588622923113</updated>
+    </task>
+    <task id="LOCAL-00002" summary="Initial configuration">
+      <created>1588623058577</created>
+      <option name="number" value="00002" />
+      <option name="presentableId" value="LOCAL-00002" />
+      <option name="project" value="LOCAL" />
+      <updated>1588623058578</updated>
+    </task>
+    <task id="LOCAL-00003" summary="Initial configuration">
+      <created>1588624890079</created>
+      <option name="number" value="00003" />
+      <option name="presentableId" value="LOCAL-00003" />
+      <option name="project" value="LOCAL" />
+      <updated>1588624890079</updated>
+    </task>
+    <task id="LOCAL-00004" summary="Delete test files. Accidentally uploaded">
+      <created>1588625106728</created>
+      <option name="number" value="00004" />
+      <option name="presentableId" value="LOCAL-00004" />
+      <option name="project" value="LOCAL" />
+      <updated>1588625106728</updated>
+    </task>
+    <option name="localTasksCounter" value="5" />
+    <servers />
+  </component>
+  <component name="TypeScriptGeneratedFilesManager">
+    <option name="version" value="2" />
+  </component>
+  <component name="Vcs.Log.History.Properties">
+    <option name="COLUMN_ORDER">
+      <list>
+        <option value="0" />
+        <option value="2" />
+        <option value="3" />
+        <option value="1" />
+      </list>
+    </option>
+  </component>
+  <component name="Vcs.Log.Tabs.Properties">
+    <option name="TAB_STATES">
+      <map>
+        <entry key="MAIN">
+          <value>
+            <State>
+              <option name="FILTERS">
+                <map>
+                  <entry key="branch">
+                    <value>
+                      <list>
+                        <option value="catphan_mtf_bug" />
+                      </list>
+                    </value>
+                  </entry>
+                </map>
+              </option>
+            </State>
+          </value>
+        </entry>
+      </map>
+    </option>
+    <option name="oldMeFiltersMigrated" value="true" />
+  </component>
+  <component name="VcsManagerConfiguration">
+    <option name="ADD_EXTERNAL_FILES_SILENTLY" value="true" />
+    <MESSAGE value="Initial configuration" />
+    <MESSAGE value="Delete test files. Accidentally uploaded" />
+    <option name="LAST_COMMIT_MESSAGE" value="Delete test files. Accidentally uploaded" />
+  </component>
+  <component name="WindowStateProjectService">
+    <state x="555" y="-995" key="CommitChangelistDialog2" timestamp="1588624563603">
+      <screen x="0" y="-1080" width="1920" height="1040" />
+    </state>
+    <state x="555" y="-995" key="CommitChangelistDialog2/0.40.1536.824/0.-1080.1920.1040@0.-1080.1920.1040" timestamp="1588624563603" />
+    <state x="92" y="-988" width="1736" height="856" key="DiffContextDialog" timestamp="1588622805764">
+      <screen x="0" y="-1080" width="1920" height="1040" />
+    </state>
+    <state x="92" y="-988" width="1736" height="856" key="DiffContextDialog/0.40.1536.824/0.-1080.1920.1040@0.-1080.1920.1040" timestamp="1588622805764" />
+    <state x="740" y="-806" key="FileChooserDialogImpl" timestamp="1588622643603">
+      <screen x="0" y="-1080" width="1920" height="1040" />
+    </state>
+    <state x="740" y="-806" key="FileChooserDialogImpl/0.40.1536.824/0.-1080.1920.1040@0.-1080.1920.1040" timestamp="1588622643603" />
+    <state x="848" y="-693" width="389" height="265" key="MultipleFileMergeDialog" timestamp="1588624941643">
+      <screen x="0" y="-1080" width="1920" height="1040" />
+    </state>
+    <state x="848" y="-693" width="389" height="265" key="MultipleFileMergeDialog/0.40.1536.824/0.-1080.1920.1040@0.-1080.1920.1040" timestamp="1588624941643" />
+    <state x="461" y="-916" key="SettingsEditor" timestamp="1588621218227">
+      <screen x="0" y="-1080" width="1920" height="1040" />
+    </state>
+    <state x="461" y="-916" key="SettingsEditor/0.40.1536.824/0.-1080.1920.1040@0.-1080.1920.1040" timestamp="1588621218227" />
+    <state x="552" y="-828" key="Vcs.Push.Dialog.v2" timestamp="1588625139317">
+      <screen x="0" y="-1080" width="1920" height="1040" />
+    </state>
+    <state x="552" y="-828" key="Vcs.Push.Dialog.v2/0.40.1536.824/0.-1080.1920.1040@0.-1080.1920.1040" timestamp="1588625139317" />
+    <state x="562" y="-856" key="com.intellij.execution.console.ConsoleHistoryController$MyBrowseAction$1" timestamp="1588622093410">
+      <screen x="0" y="-1080" width="1920" height="1040" />
+    </state>
+    <state x="562" y="-856" key="com.intellij.execution.console.ConsoleHistoryController$MyBrowseAction$1/0.40.1536.824/0.-1080.1920.1040@0.-1080.1920.1040" timestamp="1588622093410" />
+    <state x="769" y="-647" key="com.intellij.openapi.vcs.update.UpdateOrStatusOptionsDialogupdate-v2" timestamp="1588624861303">
+      <screen x="0" y="-1080" width="1920" height="1040" />
+    </state>
+    <state x="769" y="-647" key="com.intellij.openapi.vcs.update.UpdateOrStatusOptionsDialogupdate-v2/0.40.1536.824/0.-1080.1920.1040@0.-1080.1920.1040" timestamp="1588624861303" />
+  </component>
+</project>
\ No newline at end of file

From b20e341baa4c8cd2c6abb12c67986d19596f65a8 Mon Sep 17 00:00:00 2001
From: Joseph Madamesila <jmadamesila@gmail.com>
Date: Mon, 4 May 2020 15:13:12 -0600
Subject: [PATCH 3/3] Deleted workspace.xml

---
 .idea/workspace.xml | 224 --------------------------------------------
 1 file changed, 224 deletions(-)
 delete mode 100644 .idea/workspace.xml

diff --git a/.idea/workspace.xml b/.idea/workspace.xml
deleted file mode 100644
index e1dd7088..00000000
--- a/.idea/workspace.xml
+++ /dev/null
@@ -1,224 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<project version="4">
-  <component name="BranchesTreeState">
-    <expand>
-      <path>
-        <item name="ROOT" type="e8cecc67:BranchNodeDescriptor" />
-        <item name="LOCAL_ROOT" type="e8cecc67:BranchNodeDescriptor" />
-      </path>
-      <path>
-        <item name="ROOT" type="e8cecc67:BranchNodeDescriptor" />
-        <item name="REMOTE_ROOT" type="e8cecc67:BranchNodeDescriptor" />
-      </path>
-      <path>
-        <item name="ROOT" type="e8cecc67:BranchNodeDescriptor" />
-        <item name="REMOTE_ROOT" type="e8cecc67:BranchNodeDescriptor" />
-        <item name="GROUP_NODE:origin" type="e8cecc67:BranchNodeDescriptor" />
-      </path>
-    </expand>
-    <select>
-      <path>
-        <item name="ROOT" type="e8cecc67:BranchNodeDescriptor" />
-        <item name="LOCAL_ROOT" type="e8cecc67:BranchNodeDescriptor" />
-        <item name="BRANCH:catphan_mtf_bug" type="e8cecc67:BranchNodeDescriptor" />
-      </path>
-    </select>
-  </component>
-  <component name="ChangeListManager">
-    <list default="true" id="dcdfe904-d4e5-443d-a106-b24ec160934f" name="Default Changelist" comment="Delete test files. Accidentally uploaded">
-      <change beforePath="$PROJECT_DIR$/pylinac/ct.py" beforeDir="false" afterPath="$PROJECT_DIR$/pylinac/ct.py" afterDir="false" />
-    </list>
-    <list id="3d09c6ea-c924-43ef-a73e-3ce150fde602" name="Revert &quot;Initial configuration&quot;" comment="Revert &quot;Initial configuration&quot;&#10;&#10;This reverts commit eb089b1d" />
-    <option name="SHOW_DIALOG" value="false" />
-    <option name="HIGHLIGHT_CONFLICTS" value="true" />
-    <option name="HIGHLIGHT_NON_ACTIVE_CHANGELIST" value="false" />
-    <option name="LAST_RESOLUTION" value="IGNORE" />
-  </component>
-  <component name="Git.Settings">
-    <option name="RECENT_BRANCH_BY_REPOSITORY">
-      <map>
-        <entry key="$PROJECT_DIR$" value="master" />
-      </map>
-    </option>
-    <option name="RECENT_GIT_ROOT_PATH" value="$PROJECT_DIR$" />
-    <option name="RESET_MODE" value="HARD" />
-  </component>
-  <component name="ProjectId" id="1bSJa3livUQru48ShVSYVlaewjN" />
-  <component name="ProjectLevelVcsManager">
-    <ConfirmationsSetting value="2" id="Add" />
-  </component>
-  <component name="ProjectViewState">
-    <option name="hideEmptyMiddlePackages" value="true" />
-    <option name="showLibraryContents" value="true" />
-  </component>
-  <component name="PropertiesComponent">
-    <property name="ASKED_ADD_EXTERNAL_FILES" value="true" />
-    <property name="RunOnceActivity.OpenProjectViewOnStart" value="true" />
-    <property name="RunOnceActivity.ShowReadmeOnStart" value="true" />
-    <property name="SHARE_PROJECT_CONFIGURATION_FILES" value="true" />
-    <property name="TODO_SCOPE" value="All Places" />
-    <property name="WebServerToolWindowFactoryState" value="false" />
-    <property name="last_opened_file_path" value="$PROJECT_DIR$/pylinac/ct.py" />
-    <property name="node.js.detected.package.eslint" value="true" />
-    <property name="node.js.detected.package.tslint" value="true" />
-    <property name="node.js.path.for.package.eslint" value="project" />
-    <property name="node.js.path.for.package.tslint" value="project" />
-    <property name="node.js.selected.package.eslint" value="(autodetect)" />
-    <property name="node.js.selected.package.tslint" value="(autodetect)" />
-    <property name="settings.editor.selected.configurable" value="com.jetbrains.python.configuration.PyActiveSdkModuleConfigurable" />
-    <property name="two.files.diff.last.used.file" value="$PROJECT_DIR$/pylinac/ct.py" />
-  </component>
-  <component name="PyConsoleOptionsProvider">
-    <option name="myPythonConsoleState">
-      <console-settings>
-        <option name="useSoftWraps" value="true" />
-      </console-settings>
-    </option>
-  </component>
-  <component name="RunManager">
-    <configuration default="true" type="PythonConfigurationType" factoryName="Python">
-      <module name="TBCCpylinac" />
-      <option name="INTERPRETER_OPTIONS" value="" />
-      <option name="PARENT_ENVS" value="true" />
-      <envs>
-        <env name="PYTHONUNBUFFERED" value="1" />
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-      <option name="SDK_HOME" value="" />
-      <option name="WORKING_DIRECTORY" value="" />
-      <option name="IS_MODULE_SDK" value="false" />
-      <option name="ADD_CONTENT_ROOTS" value="true" />
-      <option name="ADD_SOURCE_ROOTS" value="true" />
-      <EXTENSION ID="PythonCoverageRunConfigurationExtension" runner="coverage.py" />
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-      <option name="PARAMETERS" value="" />
-      <option name="SHOW_COMMAND_LINE" value="true" />
-      <option name="EMULATE_TERMINAL" value="false" />
-      <option name="MODULE_MODE" value="false" />
-      <option name="REDIRECT_INPUT" value="false" />
-      <option name="INPUT_FILE" value="" />
-      <method v="2" />
-    </configuration>
-  </component>
-  <component name="SvnConfiguration">
-    <configuration />
-  </component>
-  <component name="TaskManager">
-    <task active="true" id="Default" summary="Default task">
-      <changelist id="dcdfe904-d4e5-443d-a106-b24ec160934f" name="Default Changelist" comment="" />
-      <created>1588619621288</created>
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-      <option name="presentableId" value="Default" />
-      <updated>1588619621288</updated>
-      <workItem from="1588619624693" duration="4531000" />
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-    <option name="localTasksCounter" value="5" />
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\ No newline at end of file