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Commits on Feb 28, 2010
  1. initialize full rings

    fhinkel authored and jsjohnst committed Nov 15, 2009
  2. weighted initialization

    fhinkel authored and jsjohnst committed Nov 2, 2009
  3. create gif from test runs

    fhinkel authored and jsjohnst committed Nov 2, 2009
  4. draw hex picture using rMagick

    fhinkel authored and jsjohnst committed Nov 2, 2009
  5. run make cons and gfan

    fhinkel authored and jsjohnst committed Oct 22, 2009
  6. hexagon.rb and generated timecourses for traditional functions stocha…

    fhinkel authored and jsjohnst committed Oct 11, 2009
    …stic
    
    networks
    
    making the probability to be infected by a neighboring cell equal independent
    of whether it's a virus or healthy in order to model a functional stochastic
    network with fixed probabilities and not with the probabilities being a
    function themselves
  7. timecourses of length 12

    fhinkel authored and jsjohnst committed Oct 5, 2009
    concat.rb to concatenate timecourses in one file, separated by #, spaces
    between each variable
  8. print variable for 3 rings as output

    fhinkel authored and jsjohnst committed Oct 5, 2009
    fill rest of output with zeros
  9. print states to file

    fhinkel authored and jsjohnst committed Oct 4, 2009
  10. print on black background

    fhinkel authored and jsjohnst committed Oct 4, 2009
    add a few comments
Commits on Oct 4, 2009
  1. Made test.rb print out fancy colorful

    Jeremy Johnstone
    Jeremy Johnstone committed Oct 4, 2009
    output based on Franzi's code
  2. Added a method to get the number of rings

    Jeremy Johnstone
    Jeremy Johnstone committed Oct 4, 2009
  3. Merge branch 'master' of git@github.com:fhinkel/polymath

    Jeremy Johnstone
    Jeremy Johnstone committed Oct 4, 2009
  4. Merge branch 'master' of git@github.com:fhinkel/polymath

    Jeremy Johnstone
    Jeremy Johnstone committed Oct 4, 2009
  5. Merge branch 'master' of git@github.com:fhinkel/polymath

    Jeremy Johnstone
    Jeremy Johnstone committed Oct 4, 2009
    Conflicts:
    	print.rb
  6. Refactored code to better select new states

    Jeremy Johnstone
    Jeremy Johnstone committed Oct 4, 2009
  7. More variation in initialState

    Jeremy Johnstone
    Jeremy Johnstone committed Oct 4, 2009
  8. Add missing rubygems include

    Jeremy Johnstone
    Jeremy Johnstone committed Oct 4, 2009
  9. colored output

    fhinkel committed Oct 4, 2009
  10. Merge branch 'master' of git@github.com:fhinkel/polymath

    Jeremy Johnstone
    Jeremy Johnstone committed Oct 4, 2009
  11. Trying to use color

    fhinkel committed Oct 4, 2009
  12. Merge branch 'master' of git@github.com:fhinkel/polymath

    Jeremy Johnstone
    Jeremy Johnstone committed Oct 4, 2009
  13. adding ruby code

    Jeremy Johnstone
    Jeremy Johnstone committed Oct 4, 2009
Commits on Sep 27, 2009
  1. Ok, so guess it's possible to read in data still faster.

    Jeremy Johnstone
    Jeremy Johnstone committed Sep 27, 2009
    Now read in 64k at once and then loop over it. Tested with
    various sizes and this seems best fit.
  2. Seems clear() is about 5% faster than creating a new vector

    Jeremy Johnstone
    Jeremy Johnstone committed Sep 27, 2009
    in this one instance.
  3. vector.empty() is faster than size()

    Jeremy Johnstone
    Jeremy Johnstone committed Sep 27, 2009
  4. added comment about bad code practice

    Jeremy Johnstone
    Jeremy Johnstone committed Sep 27, 2009