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this is the correct one. #8

Merged
merged 2 commits into from

2 participants

@daveheitzman

ruby version added, in 1 commit. Thanks! What a great project.

@jsvazic jsvazic merged commit 93add2f into jsvazic:master
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Commits on Dec 9, 2012
  1. ruby version added. tested with 1.8.7 and 1.9.3

    David Heitzman authored
  2. small fix for bad require statement in 1.9.3

    David Heitzman authored
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73 ruby/gahelloworld.rb
@@ -0,0 +1,73 @@
+# The MIT License
+#
+# Copyright (c) 2012 David Heitzman
+#
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
+#
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
+
+require './lib/gahelloworld'
+if ARGV.empty? || ARGV.include?("-h") || ARGV.include?("--help")
+ puts "Genetic Algorithm Hello World. Ruby version by David Heitzman, 2012"
+ puts "usage: ruby gahelloworld"
+ puts " --help"
+ puts " --size=<number> population size"
+ puts " --crossover=<float> portion each generation subject to replacement by new combination of two parents"
+ puts " --mutation=<number> chance that a newly crossed over child will mutate"
+ puts " --elitism=<float> portion each generation that will be preserved"
+ puts " --seed=<number> random number seed"
+end
+size = ARGV.find{|i| i.include?("--size") }
+size = size.split("=")[1].to_i if size
+size ||= 2048
+
+crossover = ARGV.find{|i| i.include?("--crossover") }
+crossover = crossover.split("=")[1].to_f if crossover
+crossover ||= 0.8
+
+mutation = ARGV.find{|i| i.include?("--mutation") }
+mutation = mutation.split("=")[1].to_f if mutation
+mutation ||= 0.3
+
+elitism = ARGV.find{|i| i.include?("--elitism") }
+elitism = elitism.split("=")[1].to_f if elitism
+elitism ||= 0.1
+
+seed = ARGV.find{|i| i.include?("--seed") }
+seed = seed.split("=")[1].to_i if seed
+seed ||= GAHelloWorld::RAND_SEED
+
+puts "GAHellowWorld Ruby edition by David Heitzman"
+puts "target string: #{GAHelloWorld::TARGET_GENE} "
+puts "size:#{size} crossover:#{crossover} mutation:#{mutation} elitism:#{elitism} seed:#{seed}"
+max_generations = 16384
+pop = GAHelloWorld::Population.new(size, crossover, elitism, mutation, seed)
+ curgen = 1
+ finished=false
+ while curgen <= 16384 && !finished
+ finished=false
+ puts("Generation #{curgen}: #{pop.population[0].gene}. Fitness: #{pop.population[0].fitness}" )
+ if pop.population[0].fitness == 0
+ puts "Finished-- generation: #{curgen}, gene: #{pop.population.first.gene}. "
+ finished=true
+ else
+ pop.evolve
+ end
+ curgen += 1
+ puts "Reached max generation (#{max_generations}). Current best: #{pop.population.first.gene}" if curgen > max_generations
+ end
+
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150 ruby/lib/gahelloworld.rb
@@ -0,0 +1,150 @@
+# The MIT License
+#
+# Copyright (c) 2012 David Heitzman
+#
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
+#
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
+
+module GAHelloWorld
+ RAND_SEED=srand
+ TARGET_GENE='Hello World!'
+ ALLOWED_LETTERS = (32..122).to_a.map{|i| i.chr}
+
+ class Chromosome
+ attr_reader :gene_ary, :target_ary, :gene
+
+ class << self
+ def gen_random()
+ str=''
+ TARGET_GENE.size.times do |i|
+ str << ALLOWED_LETTERS[rand(ALLOWED_LETTERS.size)-1]
+ end
+ Chromosome.new(str)
+ end
+
+ def to_int_array(str)
+ #convenience method to get an array of strings for any string, compatible with ruby 1.9.3 and 1.8.7
+ out=[]
+ str.each_byte do |c| out << c end
+ out
+ end
+ end
+
+ def initialize(str='')
+ @gene=str == '' ? Chromosome.gen_random.gene : str
+ @gene_ary ||= Chromosome.to_int_array(@gene)
+ @target_ary ||= Chromosome.to_int_array(TARGET_GENE)
+ end
+
+ def fitness
+ @fitness ||=
+ begin
+ #normal -- matches the target string
+ diff=0
+ gene_ary.size.times do |i| diff += (gene_ary[i].to_i - target_ary[i].to_i).abs end
+ diff
+ end
+ end
+
+ def mate partner
+ #split the chromosome at some random point.
+ #create two new chromosomes and return them.
+ # chrom1 gets the first half from itself and the second from the partner
+ # chrom2 gets the first half from the partner and the second from itself
+ pivot = rand( gene_ary.size() - 1)
+ ng1= gene[0..pivot] + partner.gene[pivot+1..-1]
+ ng2= partner.gene[0..pivot] + gene[pivot+1..-1]
+ [ Chromosome.new(ng1) , Chromosome.new(ng2) ]
+ end
+
+ def mutate
+ newstr=@gene.clone
+ newstr[rand(@gene.size)] = ALLOWED_LETTERS[ rand(ALLOWED_LETTERS.size) ]
+ Chromosome.new newstr
+ end
+
+
+ end
+
+ class Population
+ attr_accessor :population
+ Tourney_size = 3
+
+ def each(&block)
+ @population.each do |i|
+ block.call(i)
+ end
+ end
+
+ def initialize(size, crossover, elitism, mutation, seed)
+ @size = size
+ @seed = seed
+ srand @seed
+ @crossover=crossover
+ @elitism=elitism
+ @mutation=mutation
+ buf = []
+ @size.times do |i|
+ buf << Chromosome::gen_random()
+ end
+ # puts @seed.to_s
+ @population = buf.sort!{ |a,b| a.fitness <=> b.fitness }
+ end
+
+ def tournament_selection
+ best = @population[rand(@population.size)]
+ Tourney_size.times do |i|
+ cont = @population[rand(@population.size)]
+ best = cont if cont.fitness < best.fitness
+ end
+ best
+ end
+
+ def evolve
+ # inspect
+ elitism_mark=(@elitism*@population.size).to_i - 1
+ buf = @population[0..elitism_mark]
+ sub_pop=@population[elitism_mark+1..-1]
+ sub_pop.each_with_index do |chrom, ind|
+ if rand <= @crossover
+ parent1=tournament_selection
+ parent2=tournament_selection
+ children = parent1.mate parent2
+ children[0] = children[0].mutate if rand < @mutation
+ children[1] = children[1].mutate if rand < @mutation
+ buf += children
+ else
+ chrom = chrom.mutate if rand < @mutation
+ buf << chrom
+ end
+ break if buf.size >= @size
+ end
+ @population = (buf+@population[elitism_mark+1...@size]).sort!{|a,b| a.fitness <=> b.fitness}
+ # inspect
+ end
+
+ def inspect
+ ind ||= -1
+ @population[0,5].each do |chrome|
+ ind += 1
+ puts "[" + ind.to_s + "] "+chrome.gene + ": fitness => " + chrome.fitness.to_s
+ end
+ end
+ end
+
+end
View
30 ruby/test/gahelloworld_test.rb
@@ -0,0 +1,30 @@
+require 'test/unit'
+require File.expand_path("../../lib/gahelloworld",__FILE__ )
+
+class GAHelloWorldTest < Test::Unit::TestCase
+
+ def test_should_accept_command_line_inputs
+ assert_equal 1,0
+ end
+
+ def test_should_accept_command_line_inputs
+ assert_equal 1,0
+ end
+
+end
+
+# tests
+# 100.times do |i|
+# @test_chrom = (GAHelloWorld::Chromosome.gen_random)
+# @test_chrom2 = (GAHelloWorld::Chromosome.gen_random)
+# puts @test_chrom.gene.inspect
+# @test_chrom = @test_chrom.mutate
+# puts @test_chrom.gene.inspect
+# kid=@test_chrom.mate(@test_chrom2)
+# puts @test_chrom2.gene.inspect
+# puts kid.first.gene
+# puts kid.last.gene
+# end
+
+# pop.inspect
+
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