Hydra-SterileEnv

This repository contains data and code to analyze data in: Miklós, Cseri, Laczkó, Kardos, Fraune & Tökölyi (2023) Environmental microbiota maintains population growth in hydra. The following files are included:

1. diversity_filtered.Rmd - R markdown document containing R code
2. experiment_filtered.qza - Qiime2 output file containing the ASV abundance table
3. metadata.tsv - sample metadata
4. unrooted-tree.qza - ASV phylogeny used for Unifrac calculation
5. classification.qza - Qiime2 output file with ASV taxonomy information
6. popsize.Rmd - code to analyze population size data
7. 7-10: 2022 jan experiment.xlsx, 2022 maj experiment.xlsx, 2023 jan experiment_8fok.xlsx, 2023 jan experiment12fok.xlsx - data files containing population size data