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Commits on Sep 6, 2016
Commits on Aug 5, 2016
  1. v0.10.15

    jts committed Aug 5, 2016
Commits on Aug 2, 2016
  1. set language standard

    mateidavid committed Aug 2, 2016
    added dockerfile for build testing
Commits on Jul 29, 2016
  1. Merge pull request #123 from sjackman/samtools-sort

    jts committed Jul 29, 2016
    sga-bam2de.pl: Fix samtools sort for samtools 1.3
Commits on Jul 28, 2016
  1. sga-bam2de.pl: Fix samtools sort for samtools 1.3

    sjackman committed Jul 28, 2016
    Fix the error:
    [bam_sort] Use -T PREFIX / -o FILE to specify temporary and final output files
    
    Fixes jts/sga#118.
Commits on Jul 21, 2016
Commits on Jul 19, 2016
  1. Merge pull request #119 from Milt0n/master

    jts committed Jul 19, 2016
    Removal of DistanceEst dependency in example script
  2. Merge pull request #1 from Milt0n/Milt0n-patch-1-DistanceEst

    Milt0n committed Jul 19, 2016
    Update sga-ecoli-miseq.sh, removal of DistanceEst
  3. Update sga-ecoli-miseq.sh, removal of DistanceEst

    Milt0n committed Jul 19, 2016
    DistanceEst is not needed here and causes problems if you try to run the example without having it otherwise installed on your system.
Commits on Jul 5, 2016
  1. Merge pull request #110 from mateidavid/fix-gcc6-c++14-friendly

    jts committed Jul 5, 2016
    Fix gcc6 issues - made code C++14 friendly
Commits on Feb 4, 2016
  1. made code c++14 friendly

    mateidavid committed Feb 4, 2016
    can be compiled by c++98, c++11, and c++14
Commits on Jan 12, 2016
  1. Merge pull request #103 from mr-c/patch-1

    jts committed Jan 12, 2016
    spelling fixes
Commits on Jan 11, 2016
  1. typo fix, optionaly->optionally

    mr-c committed Jan 11, 2016
  2. spelling fix

    mr-c committed Jan 11, 2016
    ambigious->ambiguous
Commits on Jan 5, 2016
  1. Merge pull request #102 from ljdursi/dockerfile

    jts committed Jan 5, 2016
    Add a Dockerfile
  2. Remove unnecessary dependency git; wgetting particular release versio…

    ljdursi committed Jan 5, 2016
    …n, not using git to get current master
  3. Have workdir be a volume /data

    ljdursi committed Jan 5, 2016
Commits on Dec 15, 2015
  1. fix uninitialized variable warning

    jts committed Dec 15, 2015
Commits on Dec 10, 2015
  1. Merge pull request #99 from jakevdp/legend-fix

    jts committed Dec 10, 2015
    BUG: fix legend call signature for matplotlib 1.5
Commits on Nov 11, 2015
  1. v0.10.14

    jts committed Nov 11, 2015
Commits on Nov 5, 2015
  1. update contact email address

    jts committed Nov 5, 2015
Commits on Oct 19, 2015
  1. Merge pull request #93 from ktrns/master

    jts committed Oct 19, 2015
    Fixes of minor issues that are relevant when correcting with large k-mer sizes and low coverage regions
  2. fix fm-merge help message

    jts committed Oct 19, 2015
  3. Merge pull request #91 from luizirber/feature/py3

    jts committed Oct 19, 2015
    Python 3/2 compatibility for sga-preqc-report
Commits on Aug 21, 2015
  1. added new parameter -O --count-offset to only make a correction if th…

    MichaelHiller committed Aug 21, 2015
    …e new kmer has a count higher by N than the old kmer. Default 1. Set to >1 to avoid e.g. correcting a kmer seen 3times with one that occurs 4times. Changes in Algorithm/ErrorCorrectProcess.cpp Algorithm/ErrorCorrectProcess.h SGA/SGACommon.h SGA/correct.cpp
Commits on Aug 13, 2015
Commits on Jan 29, 2015
  1. print the length of contig paths

    Jared Simpson committed with jts Oct 7, 2013