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Commits on Jan 29, 2015
  1. print the length of contig paths

    Jared Simpson authored committed
Commits on Jan 23, 2015
  1. Merge pull request #88 from mateidavid/master

    authored
    added option to specify random seed
  2. @mateidavid
Commits on Dec 19, 2014
  1. Merge pull request #87 from jgurtowski/master

    authored
    Kmer Count along a sequence (kmer-plot)
  2. fixed typo in header

    James Gurtowski authored
  3. merged kmer-plot with kmer-count

    James Gurtowski authored
Commits on Dec 10, 2014
  1. updated kmer-plot with suggested changes

    James Gurtowski authored
Commits on Dec 9, 2014
  1. removed debug lines

    James Gurtowski authored
  2. Merge branch 'master' into kmer-plot

    James Gurtowski authored
  3. adding kmer-plot command

    James Gurtowski authored
Commits on Nov 27, 2014
  1. Merge pull request #86 from ktrns/master

    authored
    ktrins:src/Algorithm/ErrorCorrectProcess.cpp: Kmer-correction bugfix. A ...
  2. @ksameith

    ktrins:src/Algorithm/ErrorCorrectProcess.cpp: Kmer-correction bugfix.…

    ksameith authored
    … A base is only corrected if there is no ambiguity.
Commits on Nov 25, 2014
Commits on Oct 2, 2014
  1. new code drop from jts/misc

    authored
Commits on Sep 29, 2014
  1. updated code from jts/misc

    authored
Commits on Sep 17, 2014
  1. remove dead code

    authored
Commits on Sep 16, 2014
Commits on Aug 28, 2014
Commits on Aug 26, 2014
  1. Add AvgHapLen tag to VCF output

    authored
Commits on Aug 25, 2014
  1. revise alignment code to hopefully avoid gross misalignments around l…

    authored
    …arge structural variation
Commits on Aug 19, 2014
Commits on Aug 12, 2014
  1. when extracting the reference sequence from VCF, should use REF field…

    authored
    … rather than ALT for the event length
Commits on Aug 5, 2014
  1. Fix header guard

    authored
Commits on Aug 1, 2014
  1. add context output to svf

    authored
  2. Allow VCF INFO flag types

    authored
Commits on Jul 30, 2014
  1. Merge pull request #76 from AlgoLab/master

    authored
    Use gzip for discarded reads if outfile has ".gz" as extension
  2. @mpre
  3. @mpre
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