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Commits on Sep 26, 2012
Commits on Sep 25, 2012
  1. v0.9.35

    authored
  2. Implemented an upper limit on the number of edges we allow a vertex t…

    authored
    …o have before giving up on using it in the assembly graph.
    
    This helps limit the memory usage in pathological cases, like when the genome contains a lot of satellite DNA.
Commits on Sep 24, 2012
  1. When building the FM-index using ropebwt the lexicographic index is b…

    authored
    …uilt using openmp if the compiler supports it.
  2. github issue 27: added --no-primer-check option to preprocess. Also, …

    authored
    …cleaned up help message.
Commits on Sep 7, 2012
  1. Fix divide-by-zero in sga-astat

    authored
  2. Set the --mina option to abyss

    authored
Commits on Aug 24, 2012
  1. Whitespace changes

    authored
Commits on Aug 23, 2012
  1. v0.9.34

    authored
  2. Explicitly construct the .sai file when using ropebwt since you canno…

    authored
    …t get the lexicographic index from ropebwt when read lengths vary
Commits on Aug 21, 2012
  1. v0.9.33

    authored
  2. Cleanup code and comments

    authored
  3. When removing transitive edges from the scaffold graph, check the ori…

    authored
    …entation of contigs in the layout
Commits on Aug 20, 2012
  1. v0.9.32

    authored
Commits on Aug 16, 2012
Commits on Aug 15, 2012
  1. Removed print

    authored
  2. Fixed DindelHaplotype::extractVariants() incorrect assertion

    Cornelis Arnout Albers authored
  3. Merge branch 'quality-scores'

    authored
  4. Merge branch 'master' of /nfs/users/nfs_j/js18/work/git_repository/sga

    Cornelis Arnout Albers authored
  5. fixing alignment bug

    Cornelis Arnout Albers authored
Commits on Aug 14, 2012
  1. Fixed inf bug in genotyping

    Cornelis Arnout Albers authored
  2. Updated examples to use ropebwt

    authored
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