… the SequenceProcessFramework to use a generic generator object.
… subprogram for cluster-extend.
…n the kmer length. Thanks to Dan Hughes for the bug report and test case.
… implemented (on OSX). This is a stop-gap measure until I have time to switch to named semaphores.
…nces that do not belong to a graph.
…nceCollection so that it does not require using a StringGraph
…he requirement that an a-statistic file is provided.
This version includes running-time improvements including: -an interval pre-computation scheme to reduce the time required when performing k-mer interval lookups -the ability to suppress construction of the reverse FM-index (when performing k-mer correction)
…. elegans assembly.
…odified sga-merge to avoid attempting to merge RBWTs if they don't exist. This new option is useful when performing k-mer correction as the RBWT is no longer used.
…tion options in place of a constructor with many arguments
…. Currently used in the k-mer corrector.