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Commits on Jan 14, 2013
  1. Turned on overlap ratio resolver

    jts committed Jan 14, 2013
  2. Wrote a new simple k-mer corrector to allow faster correction for 'ea…

    jts committed Nov 21, 2012
    …sy' sequencing errors
  3. set link flag

    jts committed Jan 14, 2013
  4. Fixed file extension in Makefile

    jts committed Jan 14, 2013
  5. v0.9.39

    jts committed Jan 14, 2013
  6. Integrating bug fixes from Kees.

    jts committed Jan 14, 2013
Commits on Jan 9, 2013
  1. v0.9.38

    jts committed Jan 9, 2013
  2. Fix links to miseq data set

    jts committed Jan 9, 2013
  3. Fixed bug where k-mer coverage parameter would be incorrectly estimat…

    jts committed Jan 9, 2013
    …ed for super-deep data
Commits on Jan 8, 2013
  1. Minor output formatting changes

    jts committed Jan 8, 2013
  2. Cleaned up graph-diff output

    jts committed Jan 8, 2013
  3. Fix VCF headers

    jts committed Jan 8, 2013
Commits on Jan 7, 2013
  1. Removing cruft

    jts committed Jan 7, 2013
  2. Turned off profiler

    jts committed Jan 7, 2013
  3. Merge branch '1000genomes'

    jts committed Jan 7, 2013
Commits on Dec 20, 2012
Commits on Dec 18, 2012
Commits on Dec 17, 2012
Commits on Dec 7, 2012
  1. Merge pull request #32 from LeeMendelowitz/bubbleOrientationIssue

    jts committed Dec 7, 2012
    bubble orientation fix
  2. Merge pull request #33 from LeeMendelowitz/statsReverseIndexFix

    jts committed Dec 7, 2012
    removed sga stats requirement for reverse index
Commits on Dec 5, 2012
  1. removed sga stats requirement for reverse index

    LeeMendelowitz committed Dec 5, 2012
    sga stats does not require the reverse index if
    using the --no-overlap option.
  2. bubble orientation fix

    LeeMendelowitz committed Dec 5, 2012
    Fixed issue where a bubble would be labeled as cleanly removable
    even if the variant walks from X to Y had different orientations
    for Y.
Commits on Nov 26, 2012
Commits on Nov 23, 2012
  1. Fixed bug where the hybrid error correction mode was using the deprec…

    jts committed Nov 23, 2012
    …ated overlap corrector, leading to a crash.
  2. v0.9.37

    jts committed Nov 23, 2012