Commits on Jul 21, 2016
Commits on Jul 19, 2016
  1. Merge pull request #119 from Milt0n/master

    Removal of DistanceEst dependency in example script
    committed on GitHub Jul 19, 2016
  2. @Milt0n

    Merge pull request #1 from Milt0n/Milt0n-patch-1-DistanceEst

    Update sga-ecoli-miseq.sh, removal of DistanceEst
    Milt0n committed on GitHub Jul 19, 2016
  3. @Milt0n

    Update sga-ecoli-miseq.sh, removal of DistanceEst

    DistanceEst is not needed here and causes problems if you try to run the example without having it otherwise installed on your system.
    Milt0n committed on GitHub Jul 19, 2016
Commits on Jul 5, 2016
  1. Merge pull request #110 from mateidavid/fix-gcc6-c++14-friendly

    Fix gcc6 issues - made code C++14 friendly
    committed on GitHub Jul 5, 2016
Commits on Feb 4, 2016
  1. @mateidavid

    made code c++14 friendly

    can be compiled by c++98, c++11, and c++14
    mateidavid committed Feb 3, 2016
Commits on Jan 12, 2016
  1. Merge pull request #103 from mr-c/patch-1

    spelling fixes
    committed Jan 12, 2016
Commits on Jan 11, 2016
  1. @mr-c

    typo fix, optionaly->optionally

    mr-c committed Jan 11, 2016
  2. @mr-c

    spelling fix

    ambigious->ambiguous
    mr-c committed Jan 11, 2016
Commits on Jan 5, 2016
  1. Merge pull request #102 from ljdursi/dockerfile

    Add a Dockerfile
    committed Jan 5, 2016
  2. @ljdursi
  3. @ljdursi

    Remove unnecessary dependency git; wgetting particular release versio…

    …n, not using git to get current master
    ljdursi committed Jan 5, 2016
  4. @ljdursi

    Have workdir be a volume /data

    ljdursi committed Jan 5, 2016
  5. @ljdursi
Commits on Dec 15, 2015
  1. fix uninitialized variable warning

    committed Dec 15, 2015
Commits on Dec 10, 2015
  1. Merge pull request #99 from jakevdp/legend-fix

    BUG: fix legend call signature for matplotlib 1.5
    committed Dec 10, 2015
  2. @jakevdp
Commits on Nov 11, 2015
  1. v0.10.14

    committed Nov 11, 2015
Commits on Nov 5, 2015
  1. update contact email address

    committed Nov 5, 2015
Commits on Oct 19, 2015
  1. Merge pull request #93 from ktrns/master

    Fixes of minor issues that are relevant when correcting with large k-mer sizes and low coverage regions
    committed Oct 19, 2015
  2. fix fm-merge help message

    committed Oct 19, 2015
  3. Merge pull request #91 from luizirber/feature/py3

    Python 3/2 compatibility for sga-preqc-report
    committed Oct 19, 2015
Commits on Aug 21, 2015
  1. @MichaelHiller

    added new parameter -O --count-offset to only make a correction if th…

    …e new kmer has a count higher by N than the old kmer. Default 1. Set to >1 to avoid e.g. correcting a kmer seen 3times with one that occurs 4times. Changes in Algorithm/ErrorCorrectProcess.cpp Algorithm/ErrorCorrectProcess.h SGA/SGACommon.h SGA/correct.cpp
    MichaelHiller committed Aug 21, 2015
Commits on Aug 13, 2015
  1. @luizirber
Commits on Jan 29, 2015
  1. print the length of contig paths

    Jared Simpson committed with Oct 7, 2013
Commits on Jan 23, 2015
  1. Merge pull request #88 from mateidavid/master

    added option to specify random seed
    committed Jan 23, 2015
  2. @mateidavid
Commits on Dec 19, 2014
  1. Merge pull request #87 from jgurtowski/master

    Kmer Count along a sequence (kmer-plot)
    committed Dec 19, 2014
  2. fixed typo in header

    James Gurtowski committed Dec 19, 2014
  3. merged kmer-plot with kmer-count

    James Gurtowski committed Dec 19, 2014