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Commits on Jun 19, 2012
Commits on Jun 15, 2012
Commits on May 31, 2012
Commits on May 29, 2012
  1. Version v0.9.20

    committed May 29, 2012
Commits on May 24, 2012
  1. When resolving scaffold gaps over ambiguity codes, the flanking seque…

    …nce of the filled gap may not match that of the scaffold anymore.
    committed May 24, 2012
Commits on May 23, 2012
  1. Minor formatting change

    committed May 23, 2012
  2. Merge pull request #19 from mh11/77a4bc7aacd7b838fc3097af515e2f27ffec…

    …de3e
    
    Enable independent indexing (and merging) of forward and reverse index (and fastq) files
    committed May 23, 2012
  3. Enable suppression of index creation also for memory only run + code …

    …formatting (spaces)
    mh11 committed May 21, 2012
  4. Supress merging of indexes / sequence files

    mh11 committed May 21, 2012
Commits on May 11, 2012
  1. Allow sga-deinterleave.pl to read gzipped files.

    Thanks to Alvaro Martinez Barrio for the code.
    committed May 11, 2012
Commits on May 9, 2012
Commits on May 4, 2012
Commits on Apr 27, 2012
  1. Do not pass -s to DistanceEst twice

    committed Apr 27, 2012
Commits on Apr 13, 2012
  1. Allow the user to define a set of sequences that are used to stop ext…

    …ension in sga-cluster
    committed Apr 13, 2012
Commits on Mar 21, 2012
Commits on Mar 6, 2012
Commits on Feb 10, 2012
  1. v0.9.19

    committed Feb 10, 2012
  2. Filter the abyss-generated insert size histogram to avoid very long D…

    …istanceEst runtime.
    committed Feb 10, 2012
Commits on Feb 6, 2012
  1. Merge branch 'new-indexer'

    committed Feb 6, 2012
Commits on Feb 3, 2012
  1. Merge pull request #12 from drio/master

    OSX not implementing certain semaphore functions
    committed Feb 3, 2012
Commits on Feb 2, 2012
  1. Warning the user about the fact he will have issues merging

    BWTs on disk since OSX doesn't implement certain semaphores'
    functions.
    drio committed Feb 2, 2012
Commits on Jan 25, 2012
Commits on Jan 23, 2012
  1. Changed the ASQG parser to only warn if the TE tag is not present ins…

    …tead of aborting
    committed Jan 23, 2012
  2. Removed unused parameter in sga walk

    committed Jan 23, 2012