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Commits on Jun 30, 2012
  1. Disable homopolymer filter

    jts committed Jun 30, 2012
Commits on Jun 29, 2012
  1. Made haplotype QC less strict

    jts committed Jun 29, 2012
  2. Fixed compiler warning

    jts committed Jun 29, 2012
Commits on Jun 27, 2012
Commits on Jun 21, 2012
Commits on Jun 19, 2012
Commits on Jun 15, 2012
Commits on Jun 14, 2012
  1. Use correct file status for popidx

    jts committed Jun 14, 2012
  2. Use full path to indices

    jts committed Jun 14, 2012
Commits on Jun 12, 2012
  1. Fixed homopolymer error when variant is in last column

    Cornelis Arnout Albers committed Jun 12, 2012
Commits on Jun 11, 2012
  1. sga-merge uses the full path to the input files so they do not need t…

    jts committed Jun 11, 2012
    …o be in the working directory
Commits on Jun 10, 2012
  1. Removed debug prints

    jts committed Jun 10, 2012
Commits on May 31, 2012
  1. Added multisample EM caller.

    Cornelis Arnout Albers committed May 31, 2012
Commits on May 24, 2012
  1. Added MultiSample EM and caller. Fixed homopolymer, added AmbiMap fil…

    Cornelis Arnout Albers committed May 24, 2012
    …ter tag
Commits on May 23, 2012
Commits on May 22, 2012
Commits on May 21, 2012
Commits on May 16, 2012
Commits on May 10, 2012
  1. More option cleanup

    jts committed May 10, 2012
  2. Cleaned up parameters

    jts committed May 10, 2012
  3. The algorithm used during haplotype assembly (dbg vs string graph) is…

    jts committed May 10, 2012
    … a command line option
  4. Moved HapgenUtil

    jts committed May 10, 2012