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Commits on Aug 14, 2012
  1. v0.9.31

    committed Aug 14, 2012
  2. Merge branch 'ropebwt'

    committed Aug 14, 2012
Commits on Aug 13, 2012
  1. BWT writing now function in ropebwt

    committed Aug 13, 2012
  2. Genotyping in multisample caller seems to work.

    Cornelis Arnout Albers committed Aug 13, 2012
  3. Added genotyping.

    Cornelis Arnout Albers committed Aug 13, 2012
  4. Integrating Heng Li's ropebwt code

    committed Aug 13, 2012
Commits on Aug 7, 2012
  1. Fixed GCC 4.6 warnings

    committed Aug 7, 2012
  2. Merge pull request #20 from nathanhaigh/master

    merge pull request 20
    committed Aug 7, 2012
  3. issue 21: merge fails when filename contains a '.' that is not part o…

    …f the file extension. fixed by more careful handling of gzipped suffixes
    committed Aug 7, 2012
Commits on Aug 3, 2012
  1. Added support for .f and .r read pair suffixes found in reads output …

    …by sff_extract version < 0.3.0.
    Nathan S. Watson-Haigh committed Aug 3, 2012
  2. Consistently display help when no command arguments are given.

    Nathan S. Watson-Haigh committed Aug 3, 2012
  3. Merge branch 'master' of git://github.com/jts/sga

    Nathan S. Watson-Haigh committed Aug 3, 2012
Commits on Aug 2, 2012
  1. Fixed unused variable warning

    committed Aug 2, 2012
Commits on Jul 29, 2012
  1. Merge branch 'master' of git://github.com/jts/sga

    Nathan S. Watson-Haigh committed Jul 30, 2012
  2. Just need to specify base name of the FASTA files.

    Nathan S. Watson-Haigh committed Jul 30, 2012
Commits on Jul 27, 2012
Commits on Jul 20, 2012
  1. v0.9.3

    committed Jul 20, 2012
  2. Merge branch 'graph-diff-refactor'

    Conflicts:
    	src/SGA/merge.cpp
    committed Jul 20, 2012
Commits on Jul 18, 2012
Commits on Jul 17, 2012
  1. temporary hack to fix crash when trying to extract pairs of reads fro…

    …m an unpaired index
    committed Jul 17, 2012
Commits on Jul 8, 2012
Commits on Jul 4, 2012
  1. added new option to scaffold2fasta --write-names, which outputs the n…

    …ames of the contigs that make up the scaffold
    committed Jul 4, 2012
Commits on Jul 2, 2012
  1. Fixed cluster extend --iterations option so it properly extends for N…

    … rounds, not to N reads
    committed Jul 2, 2012
Commits on Jun 30, 2012
  1. Disable homopolymer filter

    committed Jun 30, 2012
Commits on Jun 29, 2012
  1. Made haplotype QC less strict

    committed Jun 29, 2012
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