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Commits on Aug 23, 2012
  1. v0.9.34

    committed Aug 23, 2012
  2. Explicitly construct the .sai file when using ropebwt since you canno…

    …t get the lexicographic index from ropebwt when read lengths vary
    committed Aug 23, 2012
Commits on Aug 21, 2012
  1. v0.9.33

    committed Aug 21, 2012
  2. Cleanup code and comments

    committed Aug 21, 2012
  3. When removing transitive edges from the scaffold graph, check the ori…

    …entation of contigs in the layout
    committed Aug 21, 2012
Commits on Aug 20, 2012
  1. v0.9.32

    committed Aug 20, 2012
Commits on Aug 16, 2012
Commits on Aug 15, 2012
  1. Removed print

    committed Aug 15, 2012
  2. Fixed DindelHaplotype::extractVariants() incorrect assertion

    Cornelis Arnout Albers committed Aug 15, 2012
  3. Merge branch 'quality-scores'

    committed Aug 15, 2012
  4. Merge branch 'master' of /nfs/users/nfs_j/js18/work/git_repository/sga

    Cornelis Arnout Albers committed Aug 15, 2012
  5. fixing alignment bug

    Cornelis Arnout Albers committed Aug 15, 2012
Commits on Aug 14, 2012
  1. Fixed inf bug in genotyping

    Cornelis Arnout Albers committed Aug 14, 2012
  2. Updated examples to use ropebwt

    committed Aug 14, 2012
  3. Updated sga-index help text

    committed Aug 14, 2012
  4. v0.9.31

    committed Aug 14, 2012
  5. Merge branch 'ropebwt'

    committed Aug 14, 2012
Commits on Aug 13, 2012
  1. BWT writing now function in ropebwt

    committed Aug 13, 2012
  2. Genotyping in multisample caller seems to work.

    Cornelis Arnout Albers committed Aug 13, 2012
  3. Added genotyping.

    Cornelis Arnout Albers committed Aug 13, 2012
  4. Integrating Heng Li's ropebwt code

    committed Aug 13, 2012
  5. Merge pull request #22 from nathanhaigh/master

    Minor STDOUT updates
    committed Aug 13, 2012
  6. Merge remote-tracking branch 'upstream/master'

    Nathan S. Watson-Haigh committed Aug 13, 2012